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Protein Overview: CE39492

General Information:
Name(s) found: CE39492 [WormBase]
Description(s) found:
Found 14 descriptions.
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  • WBGene00008920 locus:eef-1G status:Confirmed UniProt:P54412 protein_id:CAJ55245.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 365 amino acids

    Gene Ontology:
    Cellular Component: eukaryotic translation elongation factor 1 complex [IEALink to PubMed article]
    Biological Process: positive regulation of growth rate [IMPLink to PubMed articleLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    translational elongation [IEALink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: translation elongation factor activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGKLYGNKD NFRTQKVLIA AKLANKTVTL AGDAAPADKF PLGVTPAFEG DALLFGAESI  60
   61 GLHLTGTSAN AETVQWLQFA EGYLLPAVLG YVLPSVSAAN FDKKTVEQYK NELNGQLQYV 120
  121 LDANARKSIV NVTRWFRTVV NQPAVKEVLG EVSLASSVAQ FNQAKFTELS AKVAKSAPKA 180
  181 EKPKKEAKPA AAAAQPEDDE PKEEKSKDPF QDMPKGTFVL DNFKRSYSNE DTATKAIPHF 240
  241 WENFDADNWS IWKCEYKYPE DLTLAFMSCN LINGMYQRLE KLKKNAFASM ILFGTDNNST 300
  301 ISGIWVWKGD KLAFELSPDW QVDYESYTWT KLDAKSDATK KEVNEYLMWE GDFGGKKFNQ 360
  361 GKIFK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..199] PSI-BLAST 34.0 STRUCTURE OF GLUTATHIONE S-TRANSFERASE III IN APO FORM
    2 View Details [200..365] PSI-BLAST 70.09691 Elongation factor 1-gamma C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.672192331361968 bayes_pls_golite062009
  • binding
    		•  0.630214408223227 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.46030380837916 bayes_pls_golite062009
  • RNA binding
    		•  0.382017633056715 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.364698672137451 bayes_pls_golite062009
  • DNA binding
    		•  0.175092771820973 bayes_pls_golite062009
  • protein binding
    		•  0.034515546627104 bayes_pls_golite062009
    		• 0.0102370745096865 bayes_pls_golite062009
    2
    Term Confidence Notes
  • translation elongation factor activity
    		•  11.9602302019768 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  7.4644014407268 bayes_pls_golite062009
  • translation regulator activity
    		•  7.42485540728491 bayes_pls_golite062009
  • binding
    		•  2.40476273878449 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.32946003917142 bayes_pls_golite062009
  • protein binding
    		•  0.505707524948553 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle