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Protein Overview: CE39344

General Information:
Name(s) found: CE39344 [WormBase]
Description(s) found:
Found 15 descriptions.
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  • WBGene00017138 Putative RNA-binding protein EEED8.10 status:Confirmed UniProt:Q09299 protein_id:CCD68738.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 738 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    serine-type endopeptidase inhibitor activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFNRSFTSN LGSAGSAKSQ QSMFKALRRL HGQNLESRGL HDMTEAFQSF VTRARFFSIG  60
   61 KLRRTWSHSA AEFMKYRRLL PMLLADGDAF DGGETDDFDA SIAFQHTSRD DRKIVVSNIS 120
  121 AKVTQSQLQS FFSQYGKITS CILPREEKKT SVFGTLPKHS RNCGTATITF KKSEHADRAK 180
  181 NANPEELKFY DQVMVVSAYV SKKRGGKGLV LSDDVGSRED TPLSRASSTQ SLASGSEQSF 240
  241 NLGNVPDKIL RRVISFLPIH ETIRLERVNK KFMEESIKSW ELVNKIALAR ETVFNKQRPM 300
  301 RTSHLKAILT RAGAHLRSLD VSGIVHLLDD RRALKVIATC CPNLVDLDIS GTHAQAEALE 360
  361 ELGESLSHLE QLSYRGMETT GDKAFYFLLK NCGHSLKFVD LRNSKRLHGR SFKLFGSQLE 420
  421 SLYLDGSSKV DEMAFEDLCT SCGGLKELRI NECYKITDEN LSMIARRMED LSILTLCGDG 480
  481 FKSLTSAGLI HISHMRNITE LALDYNALVN DELLISISAG LPLLSSLSLA NAGNDSSITA 540
  541 EGVSAIKNLK ELTQLDASSL AAVNSKVLEQ LGSLKKLEII QLRNCTYLGD DGVRAKLRMP 600
  601 NIRHVDLSGS ILVSNDSIQQ FIKAFPSGPK LPPITLVVGG TAADASKLSV RGSRVVVDFS 660
  661 DYSTIVTMQT SQCSSSKFAI GGSASDAEGS DDEFEALTAQ RSFYIDAVCG EEESPITDDG 720
  721 KLAEWAEKEA RSLGLIKD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..152] FFAS03 0.991 Nucleolin
    2 View Details [153..738] PSI-BLAST 21.0 The molecular structure of toll-like receptor 3 ligand binding domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.787118623292657 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.0269483316710413 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle