| Protein: | CE39344 |
| Organism: | Caenorhabditis elegans |
| Length: | 738 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE39344.
| Description | E-value | Query Range |
Subject Range |
|
|
365.0 | [0..1] | [735..1] |
|
Region A: Residues: [1-152] |
1 11 21 31 41 51
| | | | | |
1 MDFNRSFTSN LGSAGSAKSQ QSMFKALRRL HGQNLESRGL HDMTEAFQSF VTRARFFSIG 60
61 KLRRTWSHSA AEFMKYRRLL PMLLADGDAF DGGETDDFDA SIAFQHTSRD DRKIVVSNIS 120
121 AKVTQSQLQS FFSQYGKITS CILPREEKKT SV
|
| Detection Method: |  |
| Confidence: | 0.991 |
| Match: | 1fjeB |
| Description: | Nucleolin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.787118623292657 | bayes_pls_golite062009 |
| nucleic acid binding | 0.0269483316710413 | bayes_pls_golite062009 |
|
Region A: Residues: [153-738] |
1 11 21 31 41 51
| | | | | |
1 FGTLPKHSRN CGTATITFKK SEHADRAKNA NPEELKFYDQ VMVVSAYVSK KRGGKGLVLS 60
61 DDVGSREDTP LSRASSTQSL ASGSEQSFNL GNVPDKILRR VISFLPIHET IRLERVNKKF 120
121 MEESIKSWEL VNKIALARET VFNKQRPMRT SHLKAILTRA GAHLRSLDVS GIVHLLDDRR 180
181 ALKVIATCCP NLVDLDISGT HAQAEALEEL GESLSHLEQL SYRGMETTGD KAFYFLLKNC 240
241 GHSLKFVDLR NSKRLHGRSF KLFGSQLESL YLDGSSKVDE MAFEDLCTSC GGLKELRINE 300
301 CYKITDENLS MIARRMEDLS ILTLCGDGFK SLTSAGLIHI SHMRNITELA LDYNALVNDE 360
361 LLISISAGLP LLSSLSLANA GNDSSITAEG VSAIKNLKEL TQLDASSLAA VNSKVLEQLG 420
421 SLKKLEIIQL RNCTYLGDDG VRAKLRMPNI RHVDLSGSIL VSNDSIQQFI KAFPSGPKLP 480
481 PITLVVGGTA ADASKLSVRG SRVVVDFSDY STIVTMQTSQ CSSSKFAIGG SASDAEGSDD 540
541 EFEALTAQRS FYIDAVCGEE ESPITDDGKL AEWAEKEARS LGLIKD
|
| Detection Method: | |
| Confidence: | 21.0 |
| Match: | 2a0zA |
| Description: | The molecular structure of toll-like receptor 3 ligand binding domain |
Matching Structure (courtesy of the PDB): |
|
