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Protein Overview: gi|56554227, gi|...

General Information:
Name(s) found: gi|56554227 [NCBI NR]
gi|56554226 [NCBI NR]
Description(s) found:
Found 3 descriptions.
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  • gi|56554227|pdb|1UPW|A Chain A, Crystal Structure Of The Human Liver X Receptor Beta Ligand Binding Domain In Complex With A Synthetic Agonist [NCBI NR]
  • gi|56554226|pdb|1UPV|A Chain A, Crystal Structure Of The Human Liver X Receptor Beta Ligand Binding Domain In Complex With A Synthetic Agonist [NCBI NR]
    • Organism: Homo sapiens
    Length: 257 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSHMSQGSGE GEGVQLTAAQ ELMIQQLVAA QLQCNKRSFS DQPKVTPWPL GADPQSRDAR  60
   61 QQRFAHFTEL AIISVQEIVD FAKQVPGFLQ LGREDQIALL KASTIEIMLL ETARRYNHET 120
  121 ECITFLKDFT YSKDDFHRAG LQVEFINPIF EFSRAMRRLG LDDAEYALLI AINIFSADRP 180
  181 NVQEPGRVEA LQQPYVEALL SYTRIKRPQD QLRFPRMLMK LVSLRTLSSV HSEQVFALRL 240
  241 QDKKLPPLLS EIWDVHE

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Noble WS, et al. (2009) Manuscript in preparation. gi|112491310 gi|219109210, gi... gi|56554227, gi|...

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..257] PSI-BLAST 58.221849 Crystal structure of the human Liver X receptor beta ligand binding domain in complex with a synthetic agonist

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.15996699473685 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.46162010671465 bayes_pls_golite062009
  • protein binding
    		•  0.33427459029264 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.15459949087509 bayes_pls_golite062009
  • DNA binding
    		•  0.14395376162921 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle