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Protein Overview: egl-13

General Information:
Name(s) found: egl-13 / CE38552 [WormBase]
Description(s) found:
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  • WBGene00001182 locus:egl-13 status:Confirmed UniProt:Q4PIT4 protein_id:CCD74409.1 [WormBase]
  • gi|71996913|ref|NP_001024920.1| EGg Laying defective family member (egl-13) [Caenorhabditis elegans] [NCBI NR]
  • gi|62630013|gb|AAX88814.1| Egg laying defective protein 13, isoform c [Caenorhabditis elegans] [NCBI NR]
  • CE38552 WBGene00001182 locus:egl-13 status:Confirmed TR:Q4PIT4 protein_id:AAX88814.1 [wormpep150.fasta]
  • 38552 WBGene00001182 locus:egl-13 status:Confirmed TR:Q4PIT4 protein_id:AAX88814.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • CE38552 WBGene00001182 locus:egl-13 status:Confirmed UniProt:Q4PIT4_CAEEL protein_id:AAX88814.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE38552 WBGene00001182 locus:egl-13 status:Confirmed UniProt:Q4PIT4_CAEEL protein_id:AAX88814.1| [wormORF-contam.fasta]
  • Egg laying defective protein 13, isoform c [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • EGg Laying defective family member (egl-13) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE38552 WBGene00001182 locus:egl-13 status:Confirmed UniProt:Q4PIT4 protein_id:AAX88814.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE38552 WBGene00001182 locus:egl-13 status:Confirmed UniProt:Q4PIT4 protein_id:CCD74409.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE38552 WBGene00001182 locus:egl-13 status:Confirmed UniProt:Q23045 protein_id:CCD74409.1 Transcription factor egl-13 [c_elegans-PRJNA13758-WS250-ecoli-contam.fasta]
  • Isoform of Q23045, Isoform c of Transcription factor egl-13 OS=Caenorhabditis elegans GN=egl-13 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 422 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    Biological Process: vulval development [IMPLink to PubMed article]
    hermaphrodite genitalia development [IMPLink to PubMed article]
    regulation of transcription, DNA-dependent [IEALink to PubMed article]
    oviposition [IMPLink to PubMed article]
    anatomical structure morphogenesis [IMPLink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    plasma membrane fusion [IMPLink to PubMed article]
    Molecular Function: DNA binding [IEALink to PubMed article]
    transcription factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDTPNPAGS PHDASIKSSS STISDHTSTS ATTGISDFPD ILAQTEHGCS VLIDGNHLRE  60
   61 IINSVDTQDG KQDLLSDVIR QLTSIKERLT NDESPVKDDL KEDPDDMSPM LHAGNFDSEM 120
  121 LLRQHELMQH QQQQMIIANM LKATQSLPLL FNGGLNYEAI LNNPVLNATI AGHLPNPLAS 180
  181 NISLLQKSIS AKLAAAGNMQ TVEKVETPLN LSKDTPSPTA IPQSPLSGFR LPYSLGTNYG 240
  241 SDGQLFNNCS PNSSGKSTPG NTSVTSEVAT PRPQAKSPNH IKRPMNAFMV WARDERRKIL 300
  301 KAYPDMHNSN ISKILGSRWK GMSNSEKQPY YEEQSRLSKL HMEQHPDYRY RPRPKRTCVI 360
  361 DGKKVRVNEY KTIMKTKKDL MWGDEPGFSQ PSDLQMDLAS HVNLLNDLTQ HHHQSHLLQT 420
  421 AE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..89] deduced N/A No confident structure predictions are available.
    2 View Details [90..275] MSA 11.273996 View MSA. No confident structure predictions are available.
    3 View Details [276..422] PSI-BLAST 34.221849 No description for 2gzkA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  2.13364477654991 bayes_pls_golite062009
  • DNA binding
    		•  1.53868224871484 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.08780465158402 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.818311652354687 bayes_pls_golite062009
  • transcription factor activity
    		•  0.53515597626729 bayes_pls_golite062009
  • protein binding
    		•  0.436111251185035 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.42024807191387 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  2.13364477654991 bayes_pls_golite062009
  • DNA binding
    		•  1.53868224871484 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.08780465158402 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.818311652354687 bayes_pls_golite062009
  • transcription factor activity
    		•  0.53515597626729 bayes_pls_golite062009
  • protein binding
    		•  0.436111251185035 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.42024807191387 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle