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Protein Overview: xbx-1

General Information:
Name(s) found: xbx-1 / CE39142 [WormBase]
Description(s) found:
Found 14 descriptions.
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  • WBGene00006960 locus:xbx-1 status:Partially_confirmed UniProt:Q19119 protein_id:CAB01645.2 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 370 amino acids

    Gene Ontology:
    Cellular Component: cilium axoneme [IDA]
    cilium part [IDA]
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIWDLAKQK LVENKQRAAE LKQKLDDENG TQSDNYLSEV RRRHESHIIF AGNRKSGKSS  60
   61 FMLNFLERKE DLKDSVGLEY TYARRTRGNV KDIANLWELG GGATVTELLS VPITMKNVEI 120
  121 CSLILLLDMT NLDEMWITIE KTVDSVRRLV ENLERQDINL QTRLAEKMRL RLEKYDDGSL 180
  181 KMCNPCPIPV TIVASKYDEF QNFESEKRRH LCQFLRFLAY SYGANLMMFS SRMEQFPKLV 240
  241 KNMTSHFAFG TVCPQGYMTD HNKPMFVKCG FDSLESIGIP PASDNFMGAS SPFNLWRESF 300
  301 ISLWPQKTGT IDIEDTKKQD PMIDPVFKEP NIDNLVEIKR KELKNHIRSK RDREAAEARA 360
  361 ADRIAKINVR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..285] PSI-BLAST 49.221849 No description for 2f9lA was found.
    2 View Details [286..370] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.59612967114977 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.645233876069822 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.60449487763289 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.583757491794385 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.582816931396509 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle