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Protein Overview: gei-13

General Information:
Name(s) found: gei-13 / CE40812 [WormBase]
Description(s) found:
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  • WBGene00001570 locus:gei-13 Gex-3-interacting protein 13 status:Confirmed UniProt:P34478 protein_id:CAA80171.2 [WormBase]
  • gi|193209975|ref|NP_499134.2| GEX Interacting protein family member (gei-13) [Caenorhabditis elegans] [NCBI NR]
  • gi|152031611|sp|P34478.2|GEI13_CAEEL RecName: Full=Gex-3-interacting protein 13 [NCBI NR]
  • gi|134274938|emb|CAA80171.2| C. elegans protein F58A4.11, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|134274919|emb|CAA80127.2| C. elegans protein F58A4.11, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • Gex-3-interacting protein 13 OS=Caenorhabditis elegans GN=gei-13 PE=1 SV=2 [Swiss-Prot]
  • [wormpep130-phg-ecoli-orf-rand.fasta]
  • CE40812 WBGene00001570 locus:gei-13 status:Confirmed UniProt:P34478 protein_id:CAA80171.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE40812 WBGene00001570 locus:gei-13 status:Confirmed UniProt:P34478 protein_id:CAA80171.2| [wormORF-contam.fasta]
  • CE40812 WBGene00001570 locus:gei-13 status:Confirmed SW:P34478 protein_id:CAA80171.2 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE40812 WBGene00001570 locus:gei-13 status:Confirmed UniProt:P34478 protein_id:CAA80171.2 Gex-3-interacting protein 13 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 691 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: locomotory behavior [IMPLink to PubMed articleLink to PubMed article]
    collagen and cuticulin-based cuticle development [IMPLink to PubMed articleLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    positive regulation of multicellular organism growth [IMPLink to PubMed articleLink to PubMed article]
    Molecular Function: DNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDCSSTLAA LLPTADFTAS LGNSDDHVDV SSFTTTSEST SPPYSSSEHH SPTDQRTETP  60
   61 TSDSGNASFS PENVATSFES SDRDASPDNL STSSAHLNDL QEKGVVVDEE LQRQLLRFHQ 120
  121 DFKESLMENN QNTINMMSAA FNQQLFKQTL ANLNTVTPQL PVNIPTGLPM PASPCTTAAS 180
  181 APSVESTPTK RKRQRRNPVW PYFDVIDGTA RCKQCLYSTK SVFSTNLKVH LRSHHRPDYE 240
  241 KVIMAEDALN LNALLLSGNT SKLFNVDANR KRMPPMTSSI LMTINKLANQ QQNGEENPLN 300
  301 AVLRQTIANN GLQQHLQNVQ TQLQAAQAAV QKQQQQQQQQ QIQQQQQQQQ QGAIPQFALN 360
  361 AANLAALNQL ARNQMQPTPP PVPQVSQDNI INTLNFPAHI KQEIMNAPHG TDANGVPQPK 420
  421 RRRLRRHPVW VYFKDLEDRM VGCTNCEFRT GSAFSTNLKM HLKAHHKDDY EKVLQLEEEM 480
  481 RLEEGCFGPG NKFKTELIDY IRGGGNVTTP PTPNSSSFPS TPKTPQLVQQ IISQSFARSQ 540
  541 SPNVIQNGEI KIKKECEDDM FSGLSSTDKL AALVGIAGQE VKKEEAMPAN FEEFRQRLLA 600
  601 NSSLSSFLGQ STAQPIAVDL NGSVIASETK SPCSSNEDDR KQERDKALAR LWADNETLLT 660
  661 NTHFREFVHC LAPEYEIPDV DILATSLVDQ Y

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..174] deduced N/A No confident structure predictions are available.
    2 View Details [175..286] FFAS03 0.967 No description for 2djrA was found.
    3 View Details [287..423] deduced N/A No confident structure predictions are available.
    4 View Details [424..486] FFAS03 1.28 Solution Structure of the zinc finger BED domain of the zinc finger BED domain containing protein 1
    5 View Details [487..691] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  1.89757931512299 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.10491835834182 bayes_pls_golite062009
  • DNA binding
    		•  1.06518076188101 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.01181255153189 bayes_pls_golite062009
  • protein binding
    		•  0.597080346190607 bayes_pls_golite062009
  • transcription activator activity
    		•  0.238365202870689 bayes_pls_golite062009
  • transcription factor activity
    		•  0.193318300774231 bayes_pls_golite062009
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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