| Protein: | gei-13 |
| Organism: | Caenorhabditis elegans |
| Length: | 691 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gei-13.
| Description | E-value | Query Range |
Subject Range |
|
|
1127.0 | [0..1] | [691..57] |
|
Region A: Residues: [1-174] |
1 11 21 31 41 51
| | | | | |
1 MTDCSSTLAA LLPTADFTAS LGNSDDHVDV SSFTTTSEST SPPYSSSEHH SPTDQRTETP 60
61 TSDSGNASFS PENVATSFES SDRDASPDNL STSSAHLNDL QEKGVVVDEE LQRQLLRFHQ 120
121 DFKESLMENN QNTINMMSAA FNQQLFKQTL ANLNTVTPQL PVNIPTGLPM PASP
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [175-286] |
1 11 21 31 41 51
| | | | | |
1 CTTAASAPSV ESTPTKRKRQ RRNPVWPYFD VIDGTARCKQ CLYSTKSVFS TNLKVHLRSH 60
61 HRPDYEKVIM AEDALNLNAL LLSGNTSKLF NVDANRKRMP PMTSSILMTI NK
|
| Detection Method: | |
| Confidence: | 0.967 |
| Match: | 2djrA |
| Description: | No description for 2djrA was found. |
|
Region A: Residues: [287-423] |
1 11 21 31 41 51
| | | | | |
1 LANQQQNGEE NPLNAVLRQT IANNGLQQHL QNVQTQLQAA QAAVQKQQQQ QQQQQIQQQQ 60
61 QQQQQGAIPQ FALNAANLAA LNQLARNQMQ PTPPPVPQVS QDNIINTLNF PAHIKQEIMN 120
121 APHGTDANGV PQPKRRR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [424-486] |
1 11 21 31 41 51
| | | | | |
1 LRRHPVWVYF KDLEDRMVGC TNCEFRTGSA FSTNLKMHLK AHHKDDYEKV LQLEEEMRLE 60
61 EGC
|
| Detection Method: | |
| Confidence: | 1.28 |
| Match: | 2ct5A |
| Description: | Solution Structure of the zinc finger BED domain of the zinc finger BED domain containing protein 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.89757931512299 | bayes_pls_golite062009 |
| nucleic acid binding | 1.10491835834182 | bayes_pls_golite062009 |
| DNA binding | 1.06518076188101 | bayes_pls_golite062009 |
| transcription regulator activity | 1.01181255153189 | bayes_pls_golite062009 |
| protein binding | 0.597080346190607 | bayes_pls_golite062009 |
| transcription activator activity | 0.238365202870689 | bayes_pls_golite062009 |
| transcription factor activity | 0.193318300774231 | bayes_pls_golite062009 |
|
Region A: Residues: [487-691] |
1 11 21 31 41 51
| | | | | |
1 FGPGNKFKTE LIDYIRGGGN VTTPPTPNSS SFPSTPKTPQ LVQQIISQSF ARSQSPNVIQ 60
61 NGEIKIKKEC EDDMFSGLSS TDKLAALVGI AGQEVKKEEA MPANFEEFRQ RLLANSSLSS 120
121 FLGQSTAQPI AVDLNGSVIA SETKSPCSSN EDDRKQERDK ALARLWADNE TLLTNTHFRE 180
181 FVHCLAPEYE IPDVDILATS LVDQY
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
