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Protein Overview: gi|240849537, gi...

General Information:
Name(s) found: gi|51095150 [NCBI NR]
gi|240849537 [NCBI NR]
gi|119603801 [NCBI NR]
Description(s) found:
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  • gi|51095150|gb|EAL24393.1| component of oligomeric golgi complex 5 [Homo sapiens] [NCBI NR]
  • gi|240849537|ref|NP_859422.2| component of oligomeric golgi complex 5 isoform 2 [Homo sapiens] [NCBI NR]
  • gi|119603801|gb|EAW83395.1| component of oligomeric golgi complex 5, isoform CRA_a [Homo sapiens] [NCBI NR]
  • Conserved oligomeric Golgi complex subunit 5 OS=Homo sapiens GN=COG5 PE=1 SV=3 [Swiss-Prot]
  • component of oligomeric golgi complex 5 [Homo sapiens] [nrdb_11152004_Chlamydomonas]
  • component of oligomeric golgi complex 5, isoform CRA_a [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • component of oligomeric golgi complex 5 isoform 2 [Homo sapiens] [NCBI-RefSeq_human_na_07-13-2009_con_reversed.fasta]
  • [human_BMb_040710_contam.fasta]
  • conserved oligomeric Golgi complex subunit 5 isoform 2 [Homo sapiens] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • Isoform 1 of Conserved oligomeric Golgi complex subunit 5 OS=Homo sapiens GN=COG5 [011711_HMR.fasta]
  • GeneSymbol=COG5 Synonyms=CDG2I|FLJ41732|FLJ44289|GOLTC1|GTC90 conserved oligomeric Golgi complex subunit 5 isoform 2 [Homo sapiens] [NCBI-RefSeq_Human_Seno_07-12-2011_reversed.fasta]
  • IPI:IPI00007347.5|SWISS-PROT:Q9UP83-1|ENSEMBL:ENSP00000334703|REFSEQ:NP_859422|H-INV:HIT000064807|VEGA:OTTHUMP00000025513 Tax_Id=9606 Gene_Symbol=COG5 Isoform 1 of Conserved oligomeric Golgi complex subunit 5 [ipi.HUMAN.20110912.fasta]
  • Conserved oligomeric Golgi complex subunit 5 GN=COG5 [Doctor+uniprot-HUMAN-120911.fasta]
  • Tax_Id=9606 Gene_Symbol=COG5 Isoform 1 of Conserved oligomeric Golgi complex subunit 5 [human-ipi-270911-contam-BSA.fasta]
    • Organism: Homo sapiens
    Length: 839 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGWVGGRRRD SASPPGRSRS AADDINPAPA NMEGGGGSVA VAGLGARGSG AAAATVRELL  60
   61 QDGCYSDFLN EDFDVKTYTS QSIHQAVIAE QLAKLAQGIS QLDRELHLQV VARHEDLLAQ 120
  121 ATGIESLEGV LQMMQTRIGA LQGAVDRIKA KIVEPYNKIV ARTAQLARLQ VACDLLRRII 180
  181 RILNLSKRLQ GQLQGGSREI TKAAQSLNEL DYLSQGIDLS GIEVIENDLL FIARARLEVE 240
  241 NQAKRLLEQG LETQNPTQVG TALQVFYNLG TLKDTITSVV DGYCATLEEN INSALDIKVL 300
  301 TQPSQSAVRG GPGRSTMPTP GNTAALRASF WTNMEKLMDH IYAVCGQVQH LQKVLAKKRD 360
  361 PVSHICFIEE IVKDGQPEIF YTFWNSVTQA LSSQFHMATN SSMFLKQAFE GEYPKLLRLY 420
  421 NDLWKRLQQY SQHIQGNFNA SGTTDLYVDL QHMEDDAQDI FIPKKPDYDP EKALKDSLQP 480
  481 YEAAYLSKSL SRLFDPINLV FPPGGRNPPS SDELDGIIKT IASELNVAAV DTNLTLAVSK 540
  541 NVAKTIQLYS VKSEQLLSTQ GDASQVIGPL TEGQRRNVAV VNSLYKLHQS VTKAIHALME 600
  601 NAVQPLLTSV GDAIEAIIIT MHQEDFSGSL SSSGKPDVPC SLYMKELQGF IARVMSDYFK 660
  661 HFECLDFVFD NTEAIAQRAV ELFIRHASLI RPLGEGGKMR LAADFAQMEL AVGPFCRRVS 720
  721 DLGKSYRMLR SFRPLLFQAS EHVASSPALG DVIPFSIIIQ FLFTRAPAEL KSPFQRAEWS 780
  781 HTRFSQWLDD HPSEKDRLLL IRGALEAYVQ SVRSREGKEF APVYPIMVQL LQKAMSALQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..115] PSI-BLAST 6.0 Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain; Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
    2 View Details [116..467] PSI-BLAST 17.0 Heavy meromyosin subfragment
    3 View Details [468..634] deduced N/A No confident structure predictions are available.
    4 View Details [635..751] deduced N/A No confident structure predictions are available.
    5 View Details [752..839] FFAS03 0.975 Crystal Structure Of Yan-SAM/Mae-SAM Complex

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5
    Term Confidence Notes
  • binding
    		•  2.76553673800266 bayes_pls_golite062009
  • protein binding
    		•  1.96434025125047 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.82619147445372 bayes_pls_golite062009
  • DNA binding
    		•  1.40903533329696 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.38211918800351 bayes_pls_golite062009
  • transcription factor activity
    		•  1.05134679312138 bayes_pls_golite062009
  • sphingomyelin synthase activity
    		•  0.826637723127231 bayes_pls_golite062009
  • ceramide cholinephosphotransferase activity
    		•  0.826637723127231 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.715530371553761 bayes_pls_golite062009
  • catalytic activity
    		•  0.0823489300960689 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.78

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle