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Protein Overview: RPS1_ARATH

General Information:
Name(s) found: RPS1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|30692346|ref|NP_850903.1| RPS1 (RIBOSOMAL PROTEIN S1); RNA binding / structural constituent of ribosome [Arabidopsis thaliana] [NCBI NR]
  • gi|23296539|gb|AAN13122.1| putative ribosomal protein S1 [Arabidopsis thaliana] [NCBI NR]
  • gi|21593804|gb|AAM65771.1| ribosomal protein S1 [Arabidopsis thaliana] [NCBI NR]
  • gi|16649089|gb|AAL24396.1| Unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|13877939|gb|AAK44047.1|AF370232_1 putative ribosomal protein S1 [Arabidopsis thaliana] [NCBI NR]
  • 30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana GN=RPS1 PE=1 SV=1 [Swiss-Prot]
  • putative ribosomal protein S1 [Arabidopsis thaliana]gi|21593804|gb|AAM65771.1| ribosomal protein S1 [Arabidopsis thaliana]gi|13877939|gb|AAK44047.1| putative ribosomal protein S1 [Arabidopsis thaliana]gi|16649089|gb|AAL24396.1| Unknown protein [Arabido [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 30S ribosomal protein S1 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ARRPS1, RPS1 | RPS1 (ribosomal protein S1); RNA binding | chr5:11636492-11638453 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • RNA binding / structural constituent of ribosome [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative ribosomal protein S1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ribosomal protein S1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: RPS1, ARRPS1 | ribosomal protein S1 | chr5:11619262-11621223 REVERSE LENGTH=416 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative ribosomal protein S1 OS=Arabidopsis thaliana GN=RPS1 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 416 amino acids

    Gene Ontology:
    Cellular Component: chloroplast stroma [IDA]
    chloroplast [IDA]
    membrane [IDA]
    thylakoid [IDA]
    Biological Process: translation [IEA]
    Molecular Function: RNA binding [IEA][ISS]
    structural constituent of ribosome [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLAQQFSG LRCSPLSSSS RLSRRASKNF PQNKSASVSP TIVAAVAMSS GQTKERLELK  60
   61 KMFEDAYERC RTSPMEGVAF TVDDFAAAIE QYDFNSEIGT RVKGTVFKTD ANGALVDISA 120
  121 KSSAYLSVEQ ACIHRIKHVE EAGIVPGMVE EFVIIGENES DDSLLLSLRN IQYELAWERC 180
  181 RQLQAEDVIV KAKVIGANKG GLVALVEGLR GFVPFSQISS KAAAEELLEK EIPLKFVEVD 240
  241 EEQTKLVLSN RKAVADSQAQ LGIGSVVLGV VQSLKPYGAF IDIGGINGLL HVSQISHDRV 300
  301 SDIATVLQPG DTLKVMILSH DRDRGRVSLS TKKLEPTPGD MIRNPKLVFE KAEEMAQTFR 360
  361 QRIAQAEAMA RADMLRFQPE SGLTLSSDGI LGPLGSELPD DGVDLTVDDI PSAVDI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..335] PSI-BLAST 50.39794 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
    2 View Details [336..416] PSI-BLAST 18.522879 Crystal structure of intact alpha subunit of aIF2 from Pyrococcus abyssi


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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