YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RPS1_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLAQQFSG LRCSPLSSSS RLSRRASKNF PQNKSASVSP TIVAAVAMSS GQTKERLELK  60
   61 KMFEDAYERC RTSPMEGVAF TVDDFAAAIE QYDFNSEIGT RVKGTVFKTD ANGALVDISA 120
  121 KSSAYLSVEQ ACIHRIKHVE EAGIVPGMVE EFVIIGENES DDSLLLSLRN IQYELAWERC 180
  181 RQLQAEDVIV KAKVIGANKG GLVALVEGLR GFVPFSQISS KAAAEELLEK EIPLKFVEVD 240
  241 EEQTKLVLSN RKAVADSQAQ LGIGSVVLGV VQSLKPYGAF IDIGGINGLL HVSQISHDRV 300
  301 SDIATVLQPG DTLKVMILSH DRDRGRVSLS TKKLEPTPGD MIRNPKLVFE KAEEMAQTFR 360
  361 QRIAQAEAMA RADMLRFQPE SGLTLSSDGI LGPLGSELPD DGVDLTVDDI PSAVDI

Type	Start	End	Confidence
Signal Peptide	1	51	0.83
N-region	1	42
H-region	43	48
C-region	49	51
Cleavage Site	51	52
Non-Cytoplasmic	52	416	0.99