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Protein Overview: TYDC1_ARATH

General Information:
Name(s) found: TYDC1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|68053310|sp|Q8RY79.1|TYDC1_ARATH RecName: Full=Tyrosine decarboxylase 1 [NCBI NR]
  • gi|30680963|ref|NP_849999.1| tyrosine decarboxylase, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|20465925|gb|AAM20115.1| putative tyrosine decarboxylase [Arabidopsis thaliana] [NCBI NR]
  • gi|18491209|gb|AAL69507.1| putative tyrosine decarboxylase [Arabidopsis thaliana] [NCBI NR]
  • Tyrosine decarboxylase 1 OS=Arabidopsis thaliana GN=ELI5 PE=2 SV=1 [Swiss-Prot]
  • putative tyrosine decarboxylase [Arabidopsis thaliana]gi|18491209|gb|AAL69507.1| putative tyrosine decarboxylase [Arabidopsis thaliana]gi|30680963|ref|NP_849999.1| tyrosine decarboxylase, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Tyrosine decarboxylase 1 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | tyrosine decarboxylase, putative | chr2:8786885-8789571 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative tyrosine decarboxylase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Tyrosine decarboxylase 1 [nr-271106-contam.fasta]
  • carboxy-lyase/ tyrosine decarboxylase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr2:8779804-8782490 FORWARD LENGTH=490 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 490 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: response to wounding [IEP]
    cellular amino acid metabolic process [ISS]
    Molecular Function: pyridoxal phosphate binding [IEA]
    catalytic activity [IEA]
    tyrosine decarboxylase activity [ISS]
    carboxy-lyase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENGSGKVLK PMDSEQLREY GHLMVDFIAD YYKTIEDFPV LSQVQPGYLH KLLPDSAPDH  60
   61 PETLDQVLDD VRAKILPGVT HWQSPSFFAY YPSNSSVAGF LGEMLSAGLG IVGFSWVTSP 120
  121 AATELEMIVL DWVAKLLNLP EQFMSKGNGG GVIQGSASEA VLVVLIAARD KVLRSVGKNA 180
  181 LEKLVVYSSD QTHSALQKAC QIAGIHPENC RVLTTDSSTN YALRPESLQE AVSRDLEAGL 240
  241 IPFFLCANVG TTSSTAVDPL AALGKIANSN GIWFHVDAAY AGSACICPEY RQYIDGVETA 300
  301 DSFNMNAHKW FLTNFDCSLL WVKDQDSLTL ALSTNPEFLK NKASQANLVV DYKDWQIPLG 360
  361 RRFRSLKLWM VLRLYGSETL KSYIRNHIKL AKEFEQLVSQ DPNFEIVTPR IFALVCFRLV 420
  421 PVKDEEKKCN NRNRELLDAV NSSGKLFMSH TALSGKIVLR CAIGAPLTEE KHVKEAWKII 480
  481 QEEASYLLHK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..490] PSI-BLAST 92.30103 DOPA decarboxylase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • 4-aminobutyrate transaminase activity
    		•  2.49533238079952 bayes_pls_golite062009
  • catalytic activity
    		•  2.29878871754893 bayes_pls_golite062009
  • transferase activity, transferring nitrogenous groups
    		•  1.28316822767388 bayes_pls_golite062009
  • transaminase activity
    		•  1.24990480711889 bayes_pls_golite062009
  • 5-aminolevulinate synthase activity
    		•  1.01853440922526 bayes_pls_golite062009
  • transferase activity
    		•  0.737426388870721 bayes_pls_golite062009
  • binding
    		•  0.252160165096264 bayes_pls_golite062009
  • L-aspartate:2-oxoglutarate aminotransferase activity
    		•  0.130698724135981 bayes_pls_golite062009
  • carbon-carbon lyase activity
    		•  0.11598778799668 bayes_pls_golite062009
  • aromatic-L-amino-acid decarboxylase activity
    		•  0.10589462882093 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.60

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle