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Protein Overview: RS5_ECOLI

General Information:
Name(s) found: RS5_ECOLI [Swiss-Prot]
Description(s) found:
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  • pir||R3EC5 ribosomal protein S5 [validated] - Escherichia coli (strain K-12) [NCBI NR]
  • gi|62288981|sp|P0A7W1.2|RS5_ECOLI RecName: Full=30S ribosomal protein S5 [NCBI NR]
  • gi|606237|gb|AAA58100.1| 30S ribosomal subunit protein S5 [Escherichia coli] [NCBI NR]
  • gi|42986|emb|CAA25722.1| unnamed protein product [Escherichia coli] [NCBI NR]
  • pir||D85995 30S ribosomal subunit protein S5 [imported] - Escherichia coli (strain O157:H7, substrain EDL933) [NCBI NR]
  • pir||H91149 30S ribosomal subunit protein S5 [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) [NCBI NR]
  • gi|209757216|gb|ACI76920.1| 30S ribosomal subunit protein S5 [Escherichia coli] [NCBI NR]
  • gi|209757214|gb|ACI76919.1| 30S ribosomal subunit protein S5 [Escherichia coli] [NCBI NR]
  • gi|209757212|gb|ACI76918.1| 30S ribosomal subunit protein S5 [Escherichia coli] [NCBI NR]
  • gi|209757210|gb|ACI76917.1| 30S ribosomal subunit protein S5 [Escherichia coli] [NCBI NR]
  • gi|209757208|gb|ACI76916.1| 30S ribosomal subunit protein S5 [Escherichia coli] [NCBI NR]
  • gi|116666604|pdb|1VS7|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains [NCBI NR]
  • gi|116666552|pdb|1VS5|E Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains [NCBI NR]
  • 30S ribosomal protein S5 - Escherichia coli [Swiss-Prot]
  • 30S ribosomal subunit protein S5 [Escherichia coli K12]gi|15833422|ref|NP_312195.1| 30S ribosomal subunit protein S5 [Escherichia coli O157:H7]gi|30065396|ref|NP_839567.1| 30S ribosomal subunit protein S5 [Shigella flexneri 2a str. 2457T]gi|29144347|re [nrdb_11152004_Chlamydomonas]
  • 30S ribosomal protein S5 [NCBI-RefSeq_human_na_08-09-2006_reversed.fasta]
  • Chain E, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is [nr-271106-contam.fasta]
  • unnamed protein product [Escherichia coli] [nr-271106-contam.fasta]
  • 30S ribosomal protein S5 OS=Escherichia coli (strain K12) GN=rpsE PE=1 SV=2 [uniprot-Ecoli-reviewed-110511.fasta]
    • Organism: Escherichia coli
    Length: 167 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHIEKQAGE LQEKLIAVNR VSKTVKGGRI FSFTALTVVG DGNGRVGFGY GKAREVPAAI  60
   61 QKAMEKARRN MINVALNNGT LQHPVKGVHT GSRVFMQPAS EGTGIIAGGA MRAVLEVAGV 120
  121 HNVLAKAYGS TNPINVVRAT IDGLENMNSP EMVAAKRGKS VEEILGK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..167] PSI-BLAST 54.154902 No description for 1vs5E was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  6.7575603459566 bayes_pls_golite062009
  • structural molecule activity
    		•  6.24187874355454 bayes_pls_golite062009
  • RNA binding
    		•  3.5405508156591 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.06806242310926 bayes_pls_golite062009
  • binding
    		•  2.86619976447436 bayes_pls_golite062009
  • DNA binding
    		•  1.59400162385296 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  1.56111033008721 bayes_pls_golite062009
  • protein binding
    		•  1.43319050998069 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.36103792167395 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  1.35935222635763 bayes_pls_golite062009
  • exoribonuclease activity
    		•  1.31205157616894 bayes_pls_golite062009
  • 3'-5' exonuclease activity
    		•  1.10842504252923 bayes_pls_golite062009
  • double-stranded RNA binding
    		•  0.967560318725736 bayes_pls_golite062009
  • mRNA binding
    		•  0.625703291171316 bayes_pls_golite062009
  • transcription factor activity
    		•  0.442070779997034 bayes_pls_golite062009
  • RNA helicase activity
    		•  0.222896865667011 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle