YRC Public Data Repository - Protein Structure Prediction

Protein:	RS5_ECOLI
Organism:	Escherichia coli
Length:	167 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS5_ECOLI.

Description	E-value	Query Range	Subject Range
RS5_BACCN - 30S ribosomal protein S5 OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-9...	2.0E-53	[1..166]	[1..166]
RS5_GEOKA - 30S ribosomal protein S5 OS=Geobacillus kaustophilus (strain HTA426) GN=rpsE PE=3 SV=1 RS5_GEOKA - 30S ribosomal protein S5 OS=Geobacillus kaustophilus GN=rpsE PE=3 SV=1 gi\|221089339, gi... - gi\|221089339\|ref\|ZP_03558859.1\| ribosomal protein S5 [Geobacillus sp. Y412MC61], gi\|220706765\|gb\|EED... gi\|229328609, gi... - gi\|229500492\|ref\|ZP_04394153.1\| ribosomal protein S5 [Geobacillus sp. Y412MC52], gi\|229328609\|gb\|EEN...	4.0E-53	[1..166]	[1..166]
RS5_BACSK - 30S ribosomal protein S5 OS=Bacillus clausii (strain KSM-K16) GN=rpsE PE=3 SV=1	6.0E-53	[1..166]	[1..166]
gi\|170125636, gi... - gi\|170709452\|ref\|ZP_02899857.1\| ribosomal protein S5 [Bacillus anthracis str. A0389], gi\|170125636\|g... gi\|170666318, gi... - gi\|170689731\|ref\|ZP_02880904.1\| ribosomal protein S5 [Bacillus anthracis str. A0465], gi\|170666318\|g... gi\|190559463, gi... - gi\|190569426\|ref\|ZP_03022309.1\| ribosomal protein S5 [Bacillus anthracis Tsiankovskii-I], gi\|1905594... gi\|177656219, gi... - gi\|177656219\|ref\|ZP_02937181.1\| ribosomal protein S5 [Bacillus anthracis str. A0174], gi\|172079835\|g... gi\|196026745, gi... - gi\|196042426\|ref\|ZP_03109686.1\| ribosomal protein S5 [Bacillus cereus NVH0597-99], gi\|196026745\|gb\|E... gi\|196036971, gi... - gi\|196036971\|ref\|ZP_03104344.1\| ribosomal protein S5 [Bacillus cereus W], gi\|195990422\|gb\|EDX54417.1... gi\|217064304, gi... - gi\|217957702\|ref\|YP_002336246.1\| ribosomal protein S5 [Bacillus cereus AH187], gi\|217064304\|gb\|ACJ78... gi\|206732895, gi... - gi\|206972321\|ref\|ZP_03233268.1\| 30S ribosomal protein S5 [Bacillus cereus AH1134], gi\|206732895\|gb\|E... gi\|218895262, gi... - gi\|218895262\|ref\|YP_002443673.1\| ribosomal protein S5 [Bacillus cereus G9842], gi\|218544065\|gb\|ACK96... gi\|218162439, gi... - gi\|218234482\|ref\|YP_002364976.1\| ribosomal protein S5 [Bacillus cereus B4264], gi\|218162439\|gb\|ACK62... gi\|221237945, gi... - gi\|222093897\|ref\|YP_002527947.1\| ribosomal protein L18 (50S ribosomal protein L18) [Bacillus cereus ... RS5_BACHK - 30S ribosomal protein S5 OS=Bacillus thuringiensis subsp. konkukian GN=rpsE PE=3 SV=1 gi\|218536082, gi... - gi\|218901331\|ref\|YP_002449165.1\| ribosomal protein S5 [Bacillus cereus AH820], gi\|218536082\|gb\|ACK88... gi\|49177088, gi\|... - gi\|49183161\|ref\|YP_026413.1\| 30S ribosomal protein S5 [Bacillus anthracis str. Sterne], gi\|49177088\|... RS5_BACHK - 30S ribosomal protein S5 OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=rpsE PE=3 SV=1 RS5_BACC1 - 30S ribosomal protein S5 OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=rpsE PE=3 SV=1 gi\|47500531, gi\|... - gi\|47525383\|ref\|YP_016732.1\| 30S ribosomal protein S5 [Bacillus anthracis str. 'Ames Ancestor'], gi\|... gi\|65317576, gi\|... - gi\|65317576\|ref\|ZP_00390535.1\| COG0098: Ribosomal protein S5 [Bacillus anthracis str. A2012], ref\|NP... gi\|30260318, gi\|... - gi\|30260318\|ref\|NP_842695.1\| 30S ribosomal protein S5 [Bacillus anthracis str. Ames], gi\|30253639\|gb... gi\|47552808, gi\|... - gi\|47570524\|ref\|ZP_00241151.1\| ribosomal protein S5 [Bacillus cereus G9241], gi\|47552808\|gb\|EAL11232... RS5_BACCZ - 30S ribosomal protein S5 OS=Bacillus cereus (strain ZK / E33L) GN=rpsE PE=3 SV=1 RS5_BACAN - 30S ribosomal protein S5 OS=Bacillus anthracis GN=rpsE PE=3 SV=1 gi\|228694097, gi... - gi\|229089258\|ref\|ZP_04220539.1\| 30S ribosomal protein S5 [Bacillus cereus Rock3-42], gi\|228694097\|gb... gi\|228688592, gi... - gi\|229094849\|ref\|ZP_04225854.1\| 30S ribosomal protein S5 [Bacillus cereus Rock3-29], gi\|228688592\|gb... gi\|229100926, gi... - gi\|229100926\|ref\|ZP_04231730.1\| 30S ribosomal protein S5 [Bacillus cereus Rock3-28], gi\|228682505\|gb... gi\|229107813, gi... - gi\|229107813\|ref\|ZP_04237449.1\| 30S ribosomal protein S5 [Bacillus cereus Rock1-15], gi\|228675662\|gb... gi\|228669674, gi... - gi\|229113803\|ref\|ZP_04243238.1\| 30S ribosomal protein S5 [Bacillus cereus Rock1-3], gi\|228669674\|gb\|... gi\|229119789, gi... - gi\|229119789\|ref\|ZP_04249050.1\| 30S ribosomal protein S5 [Bacillus cereus 95/8201], gi\|228663690\|gb\|... gi\|228657836, gi... - gi\|229125644\|ref\|ZP_04254676.1\| 30S ribosomal protein S5 [Bacillus cereus BDRD-Cer4], gi\|228657836\|g... gi\|228646511, gi... - gi\|229136973\|ref\|ZP_04265600.1\| 30S ribosomal protein S5 [Bacillus cereus BDRD-ST26], gi\|228646511\|g... gi\|228640554, gi... - gi\|229142933\|ref\|ZP_04271374.1\| 30S ribosomal protein S5 [Bacillus cereus BDRD-ST24], gi\|228640554\|g... gi\|228634952, gi... - gi\|229148536\|ref\|ZP_04276792.1\| 30S ribosomal protein S5 [Bacillus cereus m1550], gi\|228634952\|gb\|EE... gi\|228629586, gi... - gi\|229153905\|ref\|ZP_04282035.1\| 30S ribosomal protein S5 [Bacillus cereus ATCC 4342], gi\|228629586\|g... gi\|229159300, gi... - gi\|229159300\|ref\|ZP_04287324.1\| 30S ribosomal protein S5 [Bacillus cereus R309803], gi\|228624192\|gb\|... gi\|228612518, gi... - gi\|229170978\|ref\|ZP_04298579.1\| 30S ribosomal protein S5 [Bacillus cereus MM3], gi\|228612518\|gb\|EEK6... gi\|228606770, gi... - gi\|229176727\|ref\|ZP_04304131.1\| 30S ribosomal protein S5 [Bacillus cereus 172560W], gi\|228606770\|gb\|... gi\|229182521, gi... - gi\|229182521\|ref\|ZP_04309772.1\| 30S ribosomal protein S5 [Bacillus cereus BGSC 6E1], gi\|228600976\|gb... gi\|228595086, gi... - gi\|229188412\|ref\|ZP_04315460.1\| 30S ribosomal protein S5 [Bacillus cereus ATCC 10876], gi\|228595086\|... gi\|229194517, gi... - gi\|229194517\|ref\|ZP_04321320.1\| 30S ribosomal protein S5 [Bacillus cereus m1293], gi\|228588983\|gb\|EE... gi\|229265716, gi... - gi\|229601308\|ref\|YP_002864778.1\| 30S ribosomal protein S5 [Bacillus anthracis str. A0248], gi\|229265... gi\|254686626 - gi\|254686626\|ref\|ZP_05150485.1\| 30S ribosomal protein S5 [Bacillus anthracis str. CNEVA-9066] gi\|254726294 - gi\|254726294\|ref\|ZP_05188076.1\| 30S ribosomal protein S5 [Bacillus anthracis str. A1055] gi\|254735299 - gi\|254735299\|ref\|ZP_05193007.1\| 30S ribosomal protein S5 [Bacillus anthracis str. Western North Amer... gi\|254739491 - gi\|254739491\|ref\|ZP_05197189.1\| 30S ribosomal protein S5 [Bacillus anthracis str. Kruger B] gi\|254751237 - gi\|254751237\|ref\|ZP_05203275.1\| 30S ribosomal protein S5 [Bacillus anthracis str. Vollum] gi\|254756854 - gi\|254756854\|ref\|ZP_05208882.1\| 30S ribosomal protein S5 [Bacillus anthracis str. Australia 94] gi\|225862179, gi... - gi\|225862179\|ref\|YP_002747557.1\| 30S ribosomal protein S5 [Bacillus cereus 03BB102], gi\|225787983\|gb... gi\|227812800, gi... - gi\|227812800\|ref\|YP_002812809.1\| 30S ribosomal protein S5 [Bacillus anthracis str. CDC 684], gi\|2270... gi\|228860780, gi... - gi\|228898880\|ref\|ZP_04063162.1\| 30S ribosomal protein S5 [Bacillus thuringiensis IBL 4222], gi\|22886... gi\|228853739, gi... - gi\|228905924\|ref\|ZP_04069821.1\| 30S ribosomal protein S5 [Bacillus thuringiensis IBL 200], gi\|228853... gi\|228912866, gi... - gi\|228912866\|ref\|ZP_04076513.1\| 30S ribosomal protein S5 [Bacillus thuringiensis serovar pulsiensis ... gi\|228840602, gi... - gi\|228919077\|ref\|ZP_04082456.1\| 30S ribosomal protein S5 [Bacillus thuringiensis serovar huazhongens... gi\|228925380, gi... - gi\|228925380\|ref\|ZP_04088476.1\| 30S ribosomal protein S5 [Bacillus thuringiensis serovar pondicherie... gi\|228828057, gi... - gi\|228931629\|ref\|ZP_04094535.1\| 30S ribosomal protein S5 [Bacillus thuringiensis serovar andalousien... gi\|228822263, gi... - gi\|228937430\|ref\|ZP_04100076.1\| 30S ribosomal protein S5 [Bacillus thuringiensis serovar berliner AT... gi\|228815765, gi... - gi\|228943932\|ref\|ZP_04106317.1\| 30S ribosomal protein S5 [Bacillus thuringiensis serovar monterrey B... gi\|228950675, gi... - gi\|228950675\|ref\|ZP_04112809.1\| 30S ribosomal protein S5 [Bacillus thuringiensis serovar kurstaki st... gi\|228956568, gi... - gi\|228956568\|ref\|ZP_04118364.1\| 30S ribosomal protein S5 [Bacillus thuringiensis serovar pakistani s... gi\|228963227, gi... - gi\|228963227\|ref\|ZP_04124396.1\| 30S ribosomal protein S5 [Bacillus thuringiensis serovar sotto str. ... gi\|228970316, gi... - gi\|228970316\|ref\|ZP_04130975.1\| 30S ribosomal protein S5 [Bacillus thuringiensis serovar thuringiens... gi\|228782856, gi... - gi\|228976886\|ref\|ZP_04137298.1\| 30S ribosomal protein S5 [Bacillus thuringiensis Bt407], gi\|22878285... gi\|228983382, gi... - gi\|228983382\|ref\|ZP_04143595.1\| 30S ribosomal protein S5 [Bacillus thuringiensis serovar tochigiensi... gi\|228745751, gi... - gi\|229015528\|ref\|ZP_04172525.1\| 30S ribosomal protein S5 [Bacillus cereus AH1273], gi\|228745751\|gb\|E... gi\|229021737, gi... - gi\|229021737\|ref\|ZP_04178319.1\| 30S ribosomal protein S5 [Bacillus cereus AH1272], gi\|228739605\|gb\|E... gi\|228733363, gi... - gi\|229027975\|ref\|ZP_04184128.1\| 30S ribosomal protein S5 [Bacillus cereus AH1271], gi\|228733363\|gb\|E... gi\|229041032, gi... - gi\|229041032\|ref\|ZP_04189795.1\| 30S ribosomal protein S5 [Bacillus cereus AH676], gi\|228727329\|gb\|EE... gi\|228715251, gi... - gi\|229067892\|ref\|ZP_04201209.1\| 30S ribosomal protein S5 [Bacillus cereus F65185], gi\|228715251\|gb\|E... gi\|228708958, gi... - gi\|229074188\|ref\|ZP_04207234.1\| 30S ribosomal protein S5 [Bacillus cereus Rock4-18], gi\|228708958\|gb... gi\|229077427, gi... - gi\|229077427\|ref\|ZP_04210078.1\| 30S ribosomal protein S5 [Bacillus cereus Rock4-2], gi\|228705877\|gb\|... gi\|229083447, gi... - gi\|229083447\|ref\|ZP_04215795.1\| 30S ribosomal protein S5 [Bacillus cereus Rock3-44], gi\|228699880\|gb...	6.0E-53	[1..166]	[1..166]
gi\|89084953, gi\|... - gi\|89100332\|ref\|ZP_01173197.1\| 30S ribosomal protein S5 [Bacillus sp. NRRL B-14911], gi\|89084953\|gb\|...	7.0E-53	[1..166]	[1..166]
RS5_SHIDS - 30S ribosomal protein S5 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rpsE PE=3 SV=1	7.0E-53	[1..167]	[1..167]
RS5_BACCR - 30S ribosomal protein S5 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NC... RS5_BACAH - 30S ribosomal protein S5 OS=Bacillus thuringiensis (strain Al Hakam) GN=rpsE PE=3 SV=1	8.0E-53	[1..166]	[2..167]
gi\|89211461, gi\|... - gi\|89211461\|ref\|ZP_01189825.1\| Ribosomal protein S5, bacterial and organelle form [Halothermothrix o...	1.0E-52	[1..166]	[1..166]
gi\|228721391, gi... - gi\|229053973\|ref\|ZP_04195407.1\| 30S ribosomal protein S5 [Bacillus cereus AH603], gi\|228721391\|gb\|EE... gi\|89209384, gi\|... - gi\|89209384\|ref\|ZP_01187811.1\| Ribosomal protein S5, bacterial and organelle form [Bacillus weihenst...	1.0E-52	[1..166]	[1..166]
RS5_GEOSE - 30S ribosomal protein S5 OS=Geobacillus stearothermophilus GN=rpsE PE=1 SV=1	1.0E-52	[1..166]	[1..166]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHIEKQAGE LQEKLIAVNR VSKTVKGGRI FSFTALTVVG DGNGRVGFGY GKAREVPAAI  60
   61 QKAMEKARRN MINVALNNGT LQHPVKGVHT GSRVFMQPAS EGTGIIAGGA MRAVLEVAGV 120
  121 HNVLAKAYGS TNPINVVRAT IDGLENMNSP EMVAAKRGKS VEEILGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.154902
Match:	1vs5E
Description:	No description for 1vs5E was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	6.7575603459566	bayes_pls_golite062009
structural molecule activity	6.24187874355454	bayes_pls_golite062009
RNA binding	3.5405508156591	bayes_pls_golite062009
nucleic acid binding	3.06806242310926	bayes_pls_golite062009
binding	2.86619976447436	bayes_pls_golite062009
DNA binding	1.59400162385296	bayes_pls_golite062009
3'-5'-exoribonuclease activity	1.56111033008721	bayes_pls_golite062009
protein binding	1.43319050998069	bayes_pls_golite062009
transcription regulator activity	1.36103792167395	bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters	1.35935222635763	bayes_pls_golite062009
exoribonuclease activity	1.31205157616894	bayes_pls_golite062009
3'-5' exonuclease activity	1.10842504252923	bayes_pls_golite062009
double-stranded RNA binding	0.967560318725736	bayes_pls_golite062009
mRNA binding	0.625703291171316	bayes_pls_golite062009
transcription factor activity	0.442070779997034	bayes_pls_golite062009
RNA helicase activity	0.222896865667011	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: