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Protein Overview: gi|28948970, gi|...

General Information:
Name(s) found: gi|28948972 [NCBI NR]
gi|28948970 [NCBI NR]
Description(s) found:
Found 3 descriptions.
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  • gi|28948972|pdb|1NMU|D Chain D, Mbp-L30 [NCBI NR]
  • gi|28948970|pdb|1NMU|B Chain B, Mbp-L30 [NCBI NR]
    • Organism: Escherichia coli
    Length: 104 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APVKSQESIN QKLALVIKSG KYTLGYKSTV KSLRQGKSKL IIIAANTPVL RKSELEYYAM  60
   61 LSKTKVYYFQ GGNNELGTAV GKLFRVGVVS ILEAGDSDIL TTLA

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Noble WS, et al. (2009) Manuscript in preparation. gi|134105085, gi... gi|189095939, gi... gi|28948970, gi|...

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..104] PSI-BLAST 23.221849 Joint X-ray and NMR Refinement of Yeast L30e-mRNA complex

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  7.52323416912124 bayes_pls_golite062009
  • structural molecule activity
    		•  6.97581143389173 bayes_pls_golite062009
  • RNA binding
    		•  5.39762744650785 bayes_pls_golite062009
  • pre-mRNA 5'-splice site binding
    		•  5.13266824583271 bayes_pls_golite062009
    		• 3.80269215693277 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.83245292332884 bayes_pls_golite062009
  • mRNA binding
    		•  2.62944559104613 bayes_pls_golite062009
  • snoRNA binding
    		•  2.44542325037279 bayes_pls_golite062009
  • binding
    		•  1.91254208399282 bayes_pls_golite062009
  • protein binding
    		•  0.381324299701367 bayes_pls_golite062009
  • catalytic activity
    		•  0.264002643439785 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle