YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|28948970, gi\|...
Organism:	Escherichia coli
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28948970, gi|....

Description	E-value	Query Range	Subject Range
gi\|60417176 - gi\|60417176\|emb\|CAH57699.1\| 60S ribosomal protein L30 [Platichthys flesus]	129.0	[0..2]	[103..7]
gi\|67764180 - gi\|67764180\|gb\|AAY79221.1\| 60S ribosomal protein L30 [Siniperca chuatsi] gi\|182636876 - gi\|182636876\|gb\|ACB97649.1\| 60S ribosomal protein L30 [Paralichthys olivaceus]	128.0	[0..2]	[103..7]
gi\|94394262, gi\|... - gi\|94394262\|ref\|XP_980411.1\| PREDICTED: similar to ribosomal protein L30 [Mus musculus], gi\|94393498...	128.0	[0..2]	[103..53]
gi\|114609108 - gi\|114609108\|ref\|XP_527479.2\| PREDICTED: similar to ribosomal protein L30 [Pan troglodytes]	128.0	[0..3]	[103..116]
gi\|62901830 - gi\|62901830\|gb\|AAY18866.1\| RPL30 [synthetic construct]	128.0	[0..2]	[103..18]
gi\|115929548, gi... - gi\|72005286\|ref\|XP_783150.1\| PREDICTED: similar to ribosomal protein L30 [Strongylocentrotus purpura...	126.0	[0..3]	[103..8]
gi\|22758848 - gi\|22758848\|gb\|AAN05584.1\| ribosomal protein L30 [Argopecten irradians]	125.0	[0..2]	[103..7]
gi\|73955920 - gi\|73955920\|ref\|XP_851334.1\| PREDICTED: similar to ribosomal protein L30 [Canis familiaris]	125.0	[0..2]	[103..7]
gi\|47205466 - gi\|47205466\|emb\|CAF96057.1\| unnamed protein product [Tetraodon nigroviridis]	125.0	[0..2]	[103..7]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APVKSQESIN QKLALVIKSG KYTLGYKSTV KSLRQGKSKL IIIAANTPVL RKSELEYYAM  60
   61 LSKTKVYYFQ GGNNELGTAV GKLFRVGVVS ILEAGDSDIL TTLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.221849
Match:	1t0kB
Description:	Joint X-ray and NMR Refinement of Yeast L30e-mRNA complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	7.52323416912124	bayes_pls_golite062009
structural molecule activity	6.97581143389173	bayes_pls_golite062009
RNA binding	5.39762744650785	bayes_pls_golite062009
pre-mRNA 5'-splice site binding	5.13266824583271	bayes_pls_golite062009
	3.80269215693277	bayes_pls_golite062009
nucleic acid binding	2.83245292332884	bayes_pls_golite062009
mRNA binding	2.62944559104613	bayes_pls_golite062009
snoRNA binding	2.44542325037279	bayes_pls_golite062009
binding	1.91254208399282	bayes_pls_golite062009
protein binding	0.381324299701367	bayes_pls_golite062009
catalytic activity	0.264002643439785	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: