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Protein Overview: gi|24054060, gi|...

General Information:
Name(s) found: gi|24114829 [NCBI NR]
gi|24054060 [NCBI NR]
Description(s) found:
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  • gi|24114829|ref|NP_709339.1| DNA-binding transcriptional regulator GadX [Shigella flexneri 2a str. 301] [NCBI NR]
  • gi|24054060|gb|AAN45046.1| putative ARAC-type regulatory protein [Shigella flexneri 2a str. 301] [NCBI NR]
  • HTH-type transcriptional regulator gadXgi|30065159|ref|NP_839330.1| putative ARAC-type regulatory protein [Shigella flexneri 2a str. 2457T]gi|24114829|ref|NP_709339.1| putative ARAC-type regulatory protein [Shigella flexneri 2a str. 301]gi|24054060|gb| [nrdb_11152004_Chlamydomonas]
  • putative ARAC-type regulatory protein [Shigella flexneri 2a str. 301] [nr-271106-contam.fasta]
    • Organism: Shigella flexneri 2a str. 301
    Length: 274 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSLHGNCLI AYARHKYILT MVNGEYRYFN GGDLVFADAS QIRVDKCVEN FVLVSRDTLS  60
   61 LFLPMLKEEA LNLHAHKKIS SLLVHHCSRD IPVFQEVAQL SQNKNLRYAE MLRKRALIFA 120
  121 LLSVFLEDEH FIPLLLNVLQ PNMRTRVCTV INNNIAHEWT LARIASELLM SPSLLKKKLR 180
  181 EEETSYSQLL TECRMQRALQ LIVIHGFSIK RVAVSCGYHS VSYFIYVFRN YYGMTPTEYQ 240
  241 ERSAQGLPNR DSAASIVAQG NFYGTNRSAE GIRL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..138] PSI-BLAST 5.0 Apo form of the Y31V mutant dimerization domain fragment of Escherichia coli regulatory protein AraC
    2 View Details [139..274] PSI-BLAST 20.39794 MarA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • transcription regulator activity
    		•  3.57523737355937 bayes_pls_golite062009
  • DNA binding
    		•  2.7565055095762 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.48097584527739 bayes_pls_golite062009
  • transcription factor activity
    		•  2.33198016659192 bayes_pls_golite062009
  • binding
    		•  2.21133851845856 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.37638337609693 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.24108783215685 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.20862059645422 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.85

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle