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Protein Overview: gi|46016025, gi|...

General Information:
Name(s) found: gi|51970172 [NCBI NR]
gi|46016025 [NCBI NR]
gi|38603844 [NCBI NR]
gi|30684177 [NCBI NR]
gi|22136654 [NCBI NR]
Description(s) found:
Found 14 descriptions.
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  • gi|51970172|dbj|BAD43778.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|46016025|emb|CAE55213.1| Rad1-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|38603844|gb|AAR24667.1| At4g17760 [Arabidopsis thaliana] [NCBI NR]
  • gi|30684177|ref|NP_193511.2| damaged DNA binding / exodeoxyribonuclease III [Arabidopsis thaliana] [NCBI NR]
  • gi|22136654|gb|AAM91646.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 300 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: DNA repair [IEA]
    Molecular Function: damaged DNA binding [IEA]
    exodeoxyribonuclease III activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSSSPAIE PDTPDLICQL DNVQGMVDAL TCVRWKRHQD ALVELSEHGI VLIVEESGCL  60
   61 QAKVYLQREL FTKYEYGAQG RPRFGISLGL LVDCLNTFSS PGHSNTIEIK YPGPDMELLL 120
  121 KSVDTLNSCI YSEIRTRIPE TVTWDYNFEQ AGIAPLTFTV KSAALKEAID DLEWPGSSVQ 180
  181 ISLQKEPPCV IFRGEGHGDL QIDFMYYANT DLLLAFHCDT EVSYGYKYKF LKATTANIPG 240
  241 NVVRENRGSK LTIGRGGMLK VQHLVSVSKA LAPQVESAGY QPPSRIAYIE FFVKPEEPAD 300
  301

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..300] PSI-BLAST 71.0 Prolifirating cell nuclear antigen (PCNA)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA polymerase activity
    		•  4.03805427520849 bayes_pls_golite062009
  • DNA-directed DNA polymerase activity
    		•  4.03676997767928 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  2.73498799665327 bayes_pls_golite062009
  • binding
    		•  1.88302251910664 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.30503066394007 bayes_pls_golite062009
  • DNA binding
    		•  1.08991130379715 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.82032718298306 bayes_pls_golite062009
  • catalytic activity
    		•  0.48077242755678 bayes_pls_golite062009
  • protein binding
    		•  0.452894757163315 bayes_pls_golite062009
  • DNA polymerase processivity factor activity
    		•  0.35827096673638 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.252286203059537 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle