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Protein Overview: LSH1_ARATH

General Information:
Name(s) found: LSH1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|40824076|gb|AAR92340.1| At5g28490 [Arabidopsis thaliana] [NCBI NR]
  • gi|38566596|gb|AAR24188.1| At5g28490 [Arabidopsis thaliana] [NCBI NR]
  • gi|34851102|gb|AAQ82901.1| light-dependent short hypocotyl 1 [Arabidopsis thaliana] [NCBI NR]
  • gi|15241821|ref|NP_198201.1| LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1) [Arabidopsis thaliana] [NCBI NR]
  • Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana GN=LSH1 PE=1 SV=1 [Swiss-Prot]
  • At5g28490 [Arabidopsis thaliana]gi|34851102|gb|AAQ82901.1| light-dependent short hypocotyl 1 [Arabidopsis thaliana]gi|15241821|ref|NP_198201.1| expressed protein [Arabidopsis thaliana]gi|40824076|gb|AAR92340.1| At5g28490 [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: LSH1 | LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1) | chr5:10454545-10455117 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At5g28490 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • light-dependent short hypocotyl 1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: LSH1 | Protein of unknown function (DUF640) | chr5:10454541-10455113 REVERSE LENGTH=190 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At5g28490 OS=Arabidopsis thaliana GN=LSH1 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 190 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: unidimensional cell growth [IMP]
    response to far red light [IGI]
    response to blue light [IGI]
    response to light stimulus [IMP]
    response to red light [IGI]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLISHQPNK NPNSSTQLTP PSSSRYENQK RRDWNTFCQY LRNHRPPLSL PSCSGAHVLE  60
   61 FLRYLDQFGK TKVHHQNCAF FGLPNPPAPC PCPLRQAWGS LDALIGRLRA AYEENGGPPE 120
  121 ANPFGSRAVR LFLREVRDFQ AKARGVSYEK KRKRVNRQKP QTQPPLQLQQ QQQQPQQGQS 180
  181 MMANYSGATV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..190] Pfam 86.60206 No description for PF04852.3 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle