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View Structure Prediction Details

Protein: LSH1_ARATH
Organism: Arabidopsis thaliana
Length: 190 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LSH1_ARATH.

Description E-value Query
Range
Subject
Range
LSH6_ARATH - Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana GN=LSH6 PE=1 SV=1
284.0 [0..11] [178..16]

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Predicted Domain #1
Region A:
Residues: [1-190]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLISHQPNK NPNSSTQLTP PSSSRYENQK RRDWNTFCQY LRNHRPPLSL PSCSGAHVLE  60
   61 FLRYLDQFGK TKVHHQNCAF FGLPNPPAPC PCPLRQAWGS LDALIGRLRA AYEENGGPPE 120
  121 ANPFGSRAVR LFLREVRDFQ AKARGVSYEK KRKRVNRQKP QTQPPLQLQQ QQQQPQQGQS 180
  181 MMANYSGATV 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 86.60206
Match: PF04852.3
Description: No description for PF04852.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle