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Protein Overview: TAF4_ARATH

General Information:
Name(s) found: TAF4_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|38490051|gb|AAR21619.1| TATA-binding protein associated factor 4 [Arabidopsis thaliana] [NCBI NR]
  • gi|145336178|ref|NP_174093.3| TAF4B (TBP-ASSOCIATED FACTOR 4B); transcription initiation factor [Arabidopsis thaliana] [NCBI NR]
  • Transcription initiation factor TFIID subunit 4 OS=Arabidopsis thaliana GN=TAF4 PE=1 SV=1 [Swiss-Prot]
  • TATA-binding protein associated factor 4 [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: TAF4b | TAF4b (TBP-ASSOCIATED FACTOR 4b); transcription initiation factor | chr1:9643338-9647363 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • | Symbols: TAF4, TAF4B | TBP-associated factor 4B | chr1:9643351-9647376 REVERSE LENGTH=720 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • TATA-binding protein associated factor 4 (Fragment) OS=Arabidopsis thaliana GN=TAF4 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 720 amino acids

    Gene Ontology:
    Cellular Component: transcription factor TFIID complex [IEA]
    Biological Process: transcription initiation [IEA]
    Molecular Function: transcription initiation factor activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLSIVKLLE EDEEVDSKHS EDDLQMFQDS LIRDIEGSNL KSINNTTGNE SEKPQPRYMK  60
   61 LQKMSSKETP WVEKTVDPVN HNLRLARVTD LLRTVVDHQP GKKTHCLNLH YKLKRKELTM 120
  121 EEFMRQLRDL VGDQIIRSVI SQLPQLKPGN MGIKVPGRSN HDKVSKSAEF TAQESDPREV 180
  181 HVNQLSSTTS GTLNSSTTVQ GLNKHPEQHM QLPSSSFHMD TKSGSLNPYP GTNVTSPGSS 240
  241 SRAKLPDFQH RENNQNVGIA SVGGPTKSTI NMTTVPKFER PTFVNGPSRV QDGPISDFPK 300
  301 NSSFPLYSAP WQGSVTKDHT VGPSSSVIHV EHKLIDQSFE QAHKPRYLVQ QGVTNVPLKQ 360
  361 KNAIPISSND DLEKQSSKMG LFTSTTSASS VFPSMTTQLD SSTMVNMPAP SETIPKIANV 420
  421 TVTPKMPSVG QKKPLEALGS SLPPSRKKQK ICGTSSDESI EKFNDVTAVS GINLREEEKQ 480
  481 LLDSGPKKND RVSKAYRRLV HGEEERTLLQ KIPLQRKLTE IMGKSGLKHI DHDVERCLSL 540
  541 CVEERMRGLL FNIIRISKQR TDAEKCRNRT FITSDIRKEI NEMNQKVKEE WEKKHSGEEK 600
  601 NKENDTEKED QRSNEVKANK KDEDKERAKA ANVAVRAAVG GDDRFSKWKL MAEARQRSSP 660
  661 GPGRNSKKLS GGTQFGKNQG LPKVVRSISV KDVIAVVEKE PQMSRSTLLY RVYNRICSDV 720
  721

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..228] deduced N/A No confident structure predictions are available.
    2 View Details [229..409] MSA 1.278996 View MSA. No confident structure predictions are available.
    3 View Details [410..506] deduced N/A No confident structure predictions are available.
    4 View Details [507..568] PSI-BLAST 11.0 TAF(II)-135, (TAF(II)-130, hTAF4), histone fold domain
    5 View Details [569..720] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle