Protein Overview: gi|29840113, gi|...

General Information:
Name(s) found:	gi\|29840113 [NCBI NR] gi\|29834461 [NCBI NR]
Description(s) found: Found 4 descriptions. SHOW ALL	gi\|29840113\|ref\|NP_829219.1\| DNA binding protein/PTS system, IIA component [Chlamydophila caviae GPIC] [NCBI NR] gi\|29834461\|gb\|AAP05097.1\| DNA binding protein/PTS system, IIA component [Chlamydophila caviae GPIC] [NCBI NR]
Organism:	Chlamydophila caviae GPIC
Length:	226 amino acids
Gene Ontology:
Cellular Component:	NONE FOUND
Biological Process:	NONE FOUND
Molecular Function:	NONE FOUND

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLKLDELAS LLDVSENTVR RWLDEGAIPS YSMNNEHRFN REEIEDWILH NQALIGLEQD  60
   61 EKQDSEFRDL SLKYSLYKAI YRGGIIRDVT VNNKAEALQY ASSYIAEKFN LDASVLFEML 120
  121 SHRESLMSTG IGEGIALPHA KDFLINAYYD VVVPMFLSTS IDFGALDGKP VSVLFFLFAS 180
  181 QDKSHLNLIN KIVHLGMSLE ARSFLTSYPE KEQLLAYIKN WESQIH

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..66]	FFAS03	2.07	Terminase gpNU1 subunit domain
2	View Details	[67..226]	PSI-BLAST	31.0	Nitrogen regulatory bacterial protein IIa-ntr

Functions predicted (by domain):

#

Gene Ontology predictions

1

Term	Confidence	Notes
transcription regulator activity	1.3695638465841	bayes_pls_golite062009
binding	1.25832675558318	bayes_pls_golite062009
DNA binding	0.248046419970394	bayes_pls_golite062009
transcription factor activity	0.142555021912665	bayes_pls_golite062009
nucleic acid binding	0.118048144195768	bayes_pls_golite062009

2

Term	Confidence	Notes
protein-N(PI)-phosphohistidine-sugar phosphotransferase activity	4.89047341597444	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	3.92377913213665	bayes_pls_golite062009
transporter activity	2.16741930408232	bayes_pls_golite062009
transmembrane transporter activity	2.05879816720019	bayes_pls_golite062009
active transmembrane transporter activity	1.87457143976439	bayes_pls_golite062009
substrate-specific transporter activity	1.82451780056478	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.7251575499811	bayes_pls_golite062009
binding	0.396676636991646	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.19707628828681	bayes_pls_golite062009
ion transmembrane transporter activity	0.12881601139602	bayes_pls_golite062009
anion transmembrane transporter activity	0.10209580008722	bayes_pls_golite062009

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.98

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle