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Protein Overview: gi|25517479

General Information:
Name(s) found: gi|25517479 [NCBI NR]
Description(s) found:
Found 2 descriptions.
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  • pir||AI0414 aconitate hydratase (EC 4.2.1.3) [imported] - Yersinia pestis (strain CO92) [NCBI NR]
    • Organism: Yersinia pestis
    Length: 865 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEEYRKHVA ERAAEGIVPK PLDASQMAAL VESLKNPPAG EEEFLLDLLT NRVPPGVDEA  60
   61 AYVKAGFLAA IAKGEAHSPL ITAEKAIELL GTMQGGYNIH PLIDALDNEQ LAPIAAKALS 120
  121 HTLLMFDNFY DVEDKAKAGN PYAKQIIQSW ADAEWYLSRP ALAEKLTVTV FKVTGETNTD 180
  181 DLSPAPDAWS RPDIPLHALA MLKNAREGIH PDQPGSVGPI KQIEELNKKG FPLAYVGDVV 240
  241 GTGSSRKSAT NSVLWFMGDD IPYVPNKRGG GVVLGSKIAP IFFNTMEDAG ALPIEVDVAK 300
  301 LNMGDVIDIF PYQGEVRRHD TGEVLATFEL KTDVLLDEVR AGGRIPLIVG RGLTTKARES 360
  361 LGLPVSDVFR VPKPVAKSNK GFSLAQKMVG RACGVAGVRP GEYCEPKMTS VGSQDTTGPM 420
  421 TRDELKDLAC LGFSADLVMQ SFCHTAAYPK PVDVTTHHTL PDFIMNRGGV SLRPGDGIIH 480
  481 SWLNRMLLPD TVGTGGDSHT RFPIGISFPA GSGLVAFAAA TGVMPLDMPE SVLVRFKGEM 540
  541 QPGITLRDLV HAIPYYAIQE GLLTVEKKGK KNIFSGRILE IEGLPELKVE QAFELADASA 600
  601 ERSAAGCTIK LDKAPITEYL QSNVVLLKWM IAEGYGDRRT LERRINGMES WLANPSLLEG 660
  661 DADAEYAAVI EIDLAEITQP ILCAPNDPDD ARLLSDVANS KIDEVFIGSC MTNIGHFRAA 720
  721 GKLLDQHKGQ LPTRLWVAPP TKMDAAQLTE EGYYSVFGKS GARIEIPGCS LCMGNQARVA 780
  781 DGATVVSTST RNFPNRLGTG ANVYLASAEL AAIASLLGRL PTPDEYQTYM AQVDKTAEDT 840
  841 YRYLNFDQLS QYTDKADGVI FQTAV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..865] PSI-BLAST 1000.0 Aconitase B, N-terminal domain; Aconitase B, second N-terminal domain; Aconitase B, C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • 3-isopropylmalate dehydratase activity
    		•  11.6597692115322 bayes_pls_golite062009
  • aconitate hydratase activity
    		•  4.71920913892019 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  2.93956285477489 bayes_pls_golite062009
  • catalytic activity
    		•  2.4040324437254 bayes_pls_golite062009
  • carbon-oxygen lyase activity
    		•  2.08349115784849 bayes_pls_golite062009
  • hydro-lyase activity
    		•  2.04845291489052 bayes_pls_golite062009
  • lyase activity
    		•  2.0080619912194 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.38665120581594 bayes_pls_golite062009
  • binding
    		•  1.03925793375799 bayes_pls_golite062009
  • structural molecule activity
    		•  0.870913754566634 bayes_pls_golite062009
  • DNA binding
    		•  0.682819555450327 bayes_pls_golite062009
  • mRNA binding
    		•  0.52321922280827 bayes_pls_golite062009
  • RNA binding
    		•  0.41480744631042 bayes_pls_golite062009
  • protein binding
    		•  0.232638130896339 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.85

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle