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Protein Overview: EG10325

General Information:
Name(s) found: fnr / EG10325 [EcoGene]
Description(s) found:
Found 11 descriptions.
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  • oxygen-sensing anaerobic growth regulon transcriptional regulator FNR; autorepressor / Global transcription factor for anaerobic growth; FNR; [4FE-4S] cluster; homodimeric [EcoGene]
    • Organism: Escherichia coli K-12
    Length: 250 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPEKRIIRR IQSGGCAIHC QDCSISQLCI PFTLNEHELD QLDNIIERKK PIQKGQTLFK  60
   61 AGDELKSLYA IRSGTIKSYT ITEQGDEQIT GFHLAGDLVG FDAIGSGHHP SFAQALETSM 120
  121 VCEIPFETLD DLSGKMPNLR QQMMRLMSGE IKGDQDMILL LSKKNAEERL AAFIYNLSRR 180
  181 FAQRGFSPRE FRLTMTRGDI GNYLGLTVET ISRLLGRFQK SGMLAVKGKY ITIENNDALA 240
  241 QLAGHTRNVA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..250] PSI-BLAST 40.0 Catabolite gene activator protein (CAP), C-terminal domain; Catabolite gene activator protein, N-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  3.98990675336286 bayes_pls_golite062009
  • DNA binding
    		•  3.4273272886116 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.38054693035398 bayes_pls_golite062009
  • transcription factor activity
    		•  2.80110428028438 bayes_pls_golite062009
  • binding
    		•  2.18911933843505 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.87419884003031 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  0.73981105657966 bayes_pls_golite062009
  • transcription activator activity
    		•  0.53294679084865 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.53285802828572 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.513853050429619 bayes_pls_golite062009
  • protein binding
    		•  0.035220363090062 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle