YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|16505556, gi|...

General Information:
Name(s) found: gi|25513064 [NCBI NR]
gi|16505556 [NCBI NR]
Description(s) found:
SHOW ONLY BEST
  • gi|25513064|pir||AG1057 probable BglB-family transcription antiterminator STY4787 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) [NCBI NR]
  • gi|16505556|emb|CAD06908.1| putative BglB-family transcriptional antiterminator [Salmonella enterica subsp. enterica serovar Typhi] [NCBI NR]
  • putative BglB-family transcriptional antiterminator [Salmonella enterica subsp. enterica serovar Typhi Ty2]gi|16763248|ref|NP_458865.1| putative BglB-family transcriptional antiterminator [Salmonella enterica subsp. enterica serovar Typhi str. CT18]gi|2 [nrdb_11152004_Chlamydomonas]
  • probable BglB-family transcription antiterminator STY4787 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) [nr-271106-contam.fasta]
  • putative BglB-family transcriptional antiterminator [Salmonella enterica subsp. enterica serovar Typhi] [nr-271106-contam.fasta]
    • Organism: Salmonella enterica subsp. enterica serovar Typhi
    Length: 657 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCVSYSLSSG RVSANHEERD VRFPNQRLAQ LFAMLQNETL PQDELAQRLS VSTRTVRADI  60
   61 AALNMLLTPH GAQFTLSRGN GYQLKIDDPA RYQSLQTQQS PTLARGPRTS QERIHYLLAR 120
  121 FLTSAFSLKL EDLADEWFVS RATLQNDMAD VREHLLRYHL TLETRPRHGM KLFGGEMAIR 180
  181 ACLTDLLWTL VQQEPSHPLI VSTTLNTEVS QRLQSLLPDI FSHCQIRLTD EGELFLRLYC 240
  241 AVAVRRIREG YPLSECVAEE VDEKVRHAAH EIAELLQQLA DKPLSEPEVS WLKVHIAARQ 300
  301 VQEIAPSAIN ADDEEALVHY ILNFINTQYN YNLLNDKQLH ADLLTHIKTM ITRVRYQIMI 360
  361 PNPLLENIKQ HYPMAWDMTL AAISSWGKYT PYTISENEIG FLVLHIGVGL ERSYNIGYQR 420
  421 QPQVLLVCDA GNAMVRMIEA VLARKYPQIE IARTLTLRDY EARDSMVEDF VISTARIGEK 480
  481 DKPVIMIAPF PTDYQLEQIG KLVLVDRTRP WMLDKYFDAS HFRIVEGEIN QQTLFKTLCD 540
  541 QLHEEGFVDA AFLDSVIERE AIVSTLLGDG IALPHALGLL AKKTVVYTVL APQGIAWGDE 600
  601 TAHVIFLLAI SKSEYEEAMA IYDIFVTFLR ERAMTRLCAC QNFTQFKTVA MECVSRF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..193] FFAS03 1.21 Crystal structure of the ROK family transcriptional regulator, homolog of E.coli MLC protein.
    2 View Details [194..416] PSI-BLAST 31.30103 Structure of the native and inactive LicT PRD from B. subtilis
    3 View Details [417..508] FFAS03 3.42 NMR structure of enzyme GatB of the galactitol-specific phosphoenolpyruvate-dependent phosphotransferase system
    4 View Details [509..657] PSI-BLAST 26.154902 Phosphotransferase IIa-mannitol

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.767809642840856 bayes_pls_golite062009
  • catalytic activity
    		•  0.678979500792059 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.559234574371335 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.266645609122554 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.265833800805762 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.259857063944388 bayes_pls_golite062009
  • protein binding
    		•  0.190636486069194 bayes_pls_golite062009
  • DNA binding
    		•  0.0724048374846005 bayes_pls_golite062009
    2
    Term Confidence Notes
  • transcription regulator activity
    		•  2.56369131794526 bayes_pls_golite062009
  • transcription antiterminator activity
    		•  1.04498481068613 bayes_pls_golite062009
    3 No functions predicted.
    4
    Term Confidence Notes
  • transcription regulator activity
    		•  0.789390286938302 bayes_pls_golite062009
  • catalytic activity
    		•  0.547925219495929 bayes_pls_golite062009
  • binding
    		•  0.396676636991646 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle