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Protein Overview: gi|16501479, gi|...

General Information:
Name(s) found: gi|25297725 [NCBI NR]
gi|16501479 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|25297725|pir||AG0526 penicillin-binding protein 1b, peptidoglycan synthetase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) [NCBI NR]
  • gi|16501479|emb|CAD01351.1| penicillin-binding protein 1b; peptidoglycan synthetase [Salmonella enterica subsp. enterica serovar Typhi] [NCBI NR]
    • Organism: Salmonella enterica subsp. enterica serovar Typhi
    Length: 840 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGNDREPIG RKGKPSRPVK QKVSRRRQHD DDYDDDYEDE EPMPRKGKGK GRKPRGKRGW  60
   61 LWLLLKLFIV FVVLFAIYGV YLDQKIRSRI DGKVWQLPAA VYGRMVNLEP DMPVSKNEMV 120
  121 KLLEATQYRL VTKMTRPGEF TVQANSIEMI RRPFDFPDSK EGQVRARLTF SDGRLETIVN 180
  181 LDNNRQFGFF RLDPRLITML SSPNGEQRLF VPRSGFPDLL VDTLLATEDR RFYEHDGISL 240
  241 YSIGRAVLAN LTAGRTVQGA STLTQQLVKN LFLSSERSYW RKANEAYMAL IMDARYSKDR 300
  301 ILELYMNEVY LGQSGDNEIR GFPLASLYYF GRPVEELSLD QQALLVGMVK GASIYNPWRN 360
  361 PKLALERRNL VLRLLQQQKI IDQELYDMLS ARPLGVQPRG GVISPQPAFM QMVRQELQAK 420
  421 LGDKIKDLSG VKIFTTFDSV AQDAAEKAVV EGIPALKKQR KLSDLETAMV VVDRFSGEVR 480
  481 AMVGGAEPQY AGYNRAMQAR RSIGSLAKPA TYLTALSQPN LYRLNTWIAD APISLRQPNG 540
  541 QVWSPENDDR RYSESGKVML VDALTRSMNV PTVNLGMALG LPAVTDTWTK LGVPKDQLNP 600
  601 VPAMLLGALN LTPIEVAQAF QTIASGGNRA PLSALRSVIA EDGKVLYQSY PQAERAVPAQ 660
  661 AAYLTLWTMQ QVVQRGTGRQ LGAKYPGLHL VGKTGTTNNN VDTWFAGIDG SQVTITWVGR 720
  721 DNNQPTKLYG ASGAMAIYQR YLANQTPTPL VLTPPEDVVD MGVDYDGNFV CNGGMRTLPV 780
  781 WTDDPNTLCQ QGEMMQQQQQ PSGNPFDQSS QPQQPAQQQP PKEEKSDGVA GWIKEMFGGN 840
  841

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..97] deduced N/A No confident structure predictions are available.
    2 View Details [98..171] PSI-BLAST 43.0 Crystal structure of the DNA repair protein UvrB point mutant Y96A revealing a novel fold for domain 2
    3 View Details [172..840] PSI-BLAST 95.0 No description for 2oluA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • drug binding
    		•  3.68379051298286 bayes_pls_golite062009
  • serine-type D-Ala-D-Ala carboxypeptidase activity
    		•  3.12650314537616 bayes_pls_golite062009
  • penicillin binding
    		•  2.89507018520983 bayes_pls_golite062009
  • serine-type carboxypeptidase activity
    		•  2.70174066798582 bayes_pls_golite062009
  • serine-type exopeptidase activity
    		•  2.69091897402517 bayes_pls_golite062009
  • carboxypeptidase activity
    		•  1.96547160092829 bayes_pls_golite062009
  • catalytic activity
    		•  1.85492008367309 bayes_pls_golite062009
  • hydrolase activity, hydrolyzing O-glycosyl compounds
    		•  1.71682392634357 bayes_pls_golite062009
  • hydrolase activity, acting on glycosyl bonds
    		•  1.62647051069622 bayes_pls_golite062009
  • exopeptidase activity
    		•  1.44522375970439 bayes_pls_golite062009
  • binding
    		•  0.967786931456022 bayes_pls_golite062009
  • protein binding
    		•  0.274057433888583 bayes_pls_golite062009
  • peptidase activity
    		•  0.231714711049091 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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