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Protein Overview: gi|53981366, gi|...

General Information:
Name(s) found: gi|55733857 [NCBI NR]
gi|53981366 [NCBI NR]
gi|50933147 [NCBI NR]
Description(s) found:
Found 6 descriptions.
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  • gi|55733857|gb|AAV59364.1| unknown protein [Oryza sativa Japonica Group] [NCBI NR]
  • gi|53981366|gb|AAV24920.1| putative polyprotein [Oryza sativa Japonica Group] [NCBI NR]
  • gi|50933147|ref|XP_476101.1| unknown protein [Oryza sativa (japonica cultivar-group)] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 1279 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKAAAAARA LQTRAEILST SQLVVPQAAP LQPTATPTAL AAVQAQVSPD PEAQAEADME  60
   61 AMRQNMTRLQ DMLRQMQEQQ QAYEAARWTK VTSAPILQYS AGYVPPQVHP QVTTQPFPPQ 120
  121 VAQAPMYFAK QQLAVAAHPA PHVQQPVAAQ VHHQPLGQAP QTVAEGVSAL QAQLQAFLQQ 180
  181 LNQPHCISST NPSAHPEGNT SQGAPNWLPP IQPSLGVSPW NQGPQFNFVN AAQALTVRRQ 240
  241 APTPGFGTNQ VSIQAAMTWS QPIFDPSMAA QQVSPVGAGQ SNATAQPHAQ AAISPFATPY 300
  301 PQQGAVNRTG GEKGLLLSGG IKTRPIPPQF KFPPVPRYSG ETDPKEFLSI YESAIEAAHG 360
  361 DENTKAKVIH LALDGIARSW YFNLPANSIY SWEQLRDVFV LNFRGTYEEP KTQQHLLGIR 420
  421 QRQGESIREY MRRFSQAWCQ VQDITEASVI NAASAGLLEG ELTRKITNKE PQTLEHLLRI 480
  481 IDGFARGEEN SKRRQAIQAE YDKASIAAAQ AQAQVQVAEP PPPFIRQSQP AIQGQPPRQG 540
  541 QAPLTWRKFR TDRAGKAVMA IEEVQALRKE FDAQQASNHQ QPARKKRRVI QVITRADPPS 600
  601 QLSKRQKKMQ IRMIHSITLA GEGAPQYLNQ LISFGPEDAE GVMFPHQDPL VISAEIAGFE 660
  661 VRRILVDGGS SADVIFAEAY AKMGFPTQAL TPAPASLRGF GGEAVQVLGQ ALLLIAFGSG 720
  721 ENRREEQILF DVVDILYNYN AIFSRATLNK FEAISHHNYL KLKMPGPAGV IVVKGLQPSA 780
  781 ASKGDLAIIN RAVHSVETEP HERPKHTPKP TPHGKITKVQ IDDADPTKFV SLGGDIGEEE 840
  841 VESILEVLKK NIDIFAWSPD EVGGVPVDLI MHHLAVKPDI KPRKRKLRTM SADRQEAAKA 900
  901 EVQKLLRAGV IQEIDHPEWL ANLVLVRKSN GKWRIMPFGL RNTGETFARL VYKVLGRQLG 960
  961 RNVEAYVDDI VVKSRKAFDH AIDLQETFDN LRAAGIRLNP EKNRTAIILS SFAGGSQCCP1020
 1021 RPRNRVQTKT GLLRLRSTAR SEDKAHKVIV PSQYPLGEIL RGKEVTGRLS KWAAELSPFD1080
 1081 LHFVARSAIK SQVLADFVAE WTAVMCSDGS WSHKGAGVAA VLFSPNGVPI RYAARLQFDT1140
 1141 TNNAAEYEAV LLGLRKAKAL GIRRLLIRTD SKLVTSHVDK SFEAKEEGMK RYLEAVQSME1200
 1201 KCFTGITVEH LPRDQNEEAD ALAKSAACGG PHSPGIFFEV LHAPSVSMDS SEVMAIDQKK1260
 1261 LGEDPYDWRT PFVKHLETG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..322] PSI-BLAST 5.39794 Sec24
    2 View Details [323..536] MSA 1.577996 View MSA. No confident structure predictions are available.
    3 View Details [537..622] deduced N/A No confident structure predictions are available.
    4 View Details [623..793] MSA 1.813995 View MSA. No confident structure predictions are available.
    5 View Details [794..1279] PSI-BLAST 37.39794 The crystal structure of the monomeric reverse transcriptase from Moloney murine leukemia virus


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle