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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|53981366, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKAAAAARA LQTRAEILST SQLVVPQAAP LQPTATPTAL AAVQAQVSPD PEAQAEADME  60
   61 AMRQNMTRLQ DMLRQMQEQQ QAYEAARWTK VTSAPILQYS AGYVPPQVHP QVTTQPFPPQ 120
  121 VAQAPMYFAK QQLAVAAHPA PHVQQPVAAQ VHHQPLGQAP QTVAEGVSAL QAQLQAFLQQ 180
  181 LNQPHCISST NPSAHPEGNT SQGAPNWLPP IQPSLGVSPW NQGPQFNFVN AAQALTVRRQ 240
  241 APTPGFGTNQ VSIQAAMTWS QPIFDPSMAA QQVSPVGAGQ SNATAQPHAQ AAISPFATPY 300
  301 PQQGAVNRTG GEKGLLLSGG IKTRPIPPQF KFPPVPRYSG ETDPKEFLSI YESAIEAAHG 360
  361 DENTKAKVIH LALDGIARSW YFNLPANSIY SWEQLRDVFV LNFRGTYEEP KTQQHLLGIR 420
  421 QRQGESIREY MRRFSQAWCQ VQDITEASVI NAASAGLLEG ELTRKITNKE PQTLEHLLRI 480
  481 IDGFARGEEN SKRRQAIQAE YDKASIAAAQ AQAQVQVAEP PPPFIRQSQP AIQGQPPRQG 540
  541 QAPLTWRKFR TDRAGKAVMA IEEVQALRKE FDAQQASNHQ QPARKKRRVI QVITRADPPS 600
  601 QLSKRQKKMQ IRMIHSITLA GEGAPQYLNQ LISFGPEDAE GVMFPHQDPL VISAEIAGFE 660
  661 VRRILVDGGS SADVIFAEAY AKMGFPTQAL TPAPASLRGF GGEAVQVLGQ ALLLIAFGSG 720
  721 ENRREEQILF DVVDILYNYN AIFSRATLNK FEAISHHNYL KLKMPGPAGV IVVKGLQPSA 780
  781 ASKGDLAIIN RAVHSVETEP HERPKHTPKP TPHGKITKVQ IDDADPTKFV SLGGDIGEEE 840
  841 VESILEVLKK NIDIFAWSPD EVGGVPVDLI MHHLAVKPDI KPRKRKLRTM SADRQEAAKA 900
  901 EVQKLLRAGV IQEIDHPEWL ANLVLVRKSN GKWRIMPFGL RNTGETFARL VYKVLGRQLG 960
  961 RNVEAYVDDI VVKSRKAFDH AIDLQETFDN LRAAGIRLNP EKNRTAIILS SFAGGSQCCP1020
 1021 RPRNRVQTKT GLLRLRSTAR SEDKAHKVIV PSQYPLGEIL RGKEVTGRLS KWAAELSPFD1080
 1081 LHFVARSAIK SQVLADFVAE WTAVMCSDGS WSHKGAGVAA VLFSPNGVPI RYAARLQFDT1140
 1141 TNNAAEYEAV LLGLRKAKAL GIRRLLIRTD SKLVTSHVDK SFEAKEEGMK RYLEAVQSME1200
 1201 KCFTGITVEH LPRDQNEEAD ALAKSAACGG PHSPGIFFEV LHAPSVSMDS SEVMAIDQKK1260
 1261 LGEDPYDWRT PFVKHLETG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle