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Protein Overview: PUB2_ARATH

General Information:
Name(s) found: PUB2_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75252286|sp|Q5XEZ8.1|PUB2_ARATH RecName: Full=U-box domain-containing protein 2; AltName: Full=Plant U-box protein 2 [NCBI NR]
  • gi|55733751|gb|AAV59272.1| At5g67340 [Arabidopsis thaliana] [NCBI NR]
  • gi|53828543|gb|AAU94381.1| At5g67340 [Arabidopsis thaliana] [NCBI NR]
  • gi|42568835|ref|NP_201535.3| armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1 [Swiss-Prot]
  • At5g67340 [Arabidopsis thaliana]gi|42568835|ref|NP_201535.3| armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Armadillo/beta-catenin repeat family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | armadillo/beta-catenin repeat family protein / U-box domain-containing protein | chr5:26882222-26884676 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • ubiquitin-protein ligase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At5g67340 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | ARM repeat superfamily protein | chr5:26864996-26867450 FORWARD LENGTH=707 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 707 amino acids

    Gene Ontology:
    Cellular Component: ubiquitin ligase complex [IEA]
    endomembrane system [IEA]
    Biological Process: protein ubiquitination [IEA]
    Molecular Function: ubiquitin-protein ligase activity [IEA]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMVHMEVSWL RVLLDNISSY LSLSSMDDLS SNPAHKYYTR GEDIGKLIKP VLENLIDSDA  60
   61 APSELLNNGF EELAQYVDEL REQFQSWQPL STRIFYVLRI ESLASKLRES SLEVFQLLKH 120
  121 CEQHLPADLI SPSFEECIEL VKLVARDEIS YTIDQALKDQ KKGVGPTSEV LVKIAESTGL 180
  181 RSNQEILVEG VVLTNMKEDA ELTDNDTEAE YLDGLISLTT QMHEYLSDIK QAQLRCPVRV 240
  241 PSDFRCSLSL ELMTDPVIVA SGQTFERVFI QKWIDMGLMV CPKTRQALSH TTLTPNFIVR 300
  301 AFLASWCETN NVYPPDPLEL IHSSEPFPLL VESVRASSSE NGHSESLDAE ELRQVFSRSA 360
  361 SAPGIVSEVV CKTKRNNNAA ADRSLTRSNT PWKFPEERHW RHPGIIPATV RETGSSSSIE 420
  421 TEVKKLIDDL KSSSLDTQRE ATARIRILAR NSTDNRIVIA RCEAIPSLVS LLYSTDERIQ 480
  481 ADAVTCLLNL SINDNNKSLI AESGAIVPLI HVLKTGYLEE AKANSAATLF SLSVIEEYKT 540
  541 EIGEAGAIEP LVDLLGSGSL SGKKDAATAL FNLSIHHENK TKVIEAGAVR YLVELMDPAF 600
  601 GMVEKAVVVL ANLATVREGK IAIGEEGGIP VLVEVVELGS ARGKENATAA LLQLCTHSPK 660
  661 FCNNVIREGV IPPLVALTKS GTARGKEKAQ NLLKYFKAHR QSNQRRG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..140] PSI-BLAST 5.154902 Tumor suppressor gene product Apc
    2 View Details [141..231] MSA 3.297992 View MSA. Confident ab initio structure predictions are available.
    3 View Details [232..311] PSI-BLAST 10.69897 NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana
    4 View Details [312..707] PSI-BLAST 50.154902 Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle