| Protein: | PUB2_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 707 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUB2_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
365.0 | [0..5] | [697..1] |
|
|
293.0 | [0..5] | [707..1] |
|
|
255.0 | [0..9] | [706..5] |
|
Region A: Residues: [1-140] |
1 11 21 31 41 51
| | | | | |
1 MMVHMEVSWL RVLLDNISSY LSLSSMDDLS SNPAHKYYTR GEDIGKLIKP VLENLIDSDA 60
61 APSELLNNGF EELAQYVDEL REQFQSWQPL STRIFYVLRI ESLASKLRES SLEVFQLLKH 120
121 CEQHLPADLI SPSFEECIEL
|
| Detection Method: |  |
| Confidence: | 5.154902 |
| Match: | 1m5iA |
| Description: | Tumor suppressor gene product Apc |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [141-231] |
1 11 21 31 41 51
| | | | | |
1 VKLVARDEIS YTIDQALKDQ KKGVGPTSEV LVKIAESTGL RSNQEILVEG VVLTNMKEDA 60
61 ELTDNDTEAE YLDGLISLTT QMHEYLSDIK Q
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.991 | N/A | N/A | a.46.1 | Methionine synthase domain |
|
Region A: Residues: [232-311] |
1 11 21 31 41 51
| | | | | |
1 AQLRCPVRVP SDFRCSLSLE LMTDPVIVAS GQTFERVFIQ KWIDMGLMVC PKTRQALSHT 60
61 TLTPNFIVRA FLASWCETNN
|
| Detection Method: | |
| Confidence: | 10.69897 |
| Match: | 1t1hA |
| Description: | NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [312-707] |
1 11 21 31 41 51
| | | | | |
1 VYPPDPLELI HSSEPFPLLV ESVRASSSEN GHSESLDAEE LRQVFSRSAS APGIVSEVVC 60
61 KTKRNNNAAA DRSLTRSNTP WKFPEERHWR HPGIIPATVR ETGSSSSIET EVKKLIDDLK 120
121 SSSLDTQREA TARIRILARN STDNRIVIAR CEAIPSLVSL LYSTDERIQA DAVTCLLNLS 180
181 INDNNKSLIA ESGAIVPLIH VLKTGYLEEA KANSAATLFS LSVIEEYKTE IGEAGAIEPL 240
241 VDLLGSGSLS GKKDAATALF NLSIHHENKT KVIEAGAVRY LVELMDPAFG MVEKAVVVLA 300
301 NLATVREGKI AIGEEGGIPV LVEVVELGSA RGKENATAAL LQLCTHSPKF CNNVIREGVI 360
361 PPLVALTKSG TARGKEKAQN LLKYFKAHRQ SNQRRG
|
| Detection Method: | |
| Confidence: | 50.154902 |
| Match: | 1wa5B |
| Description: | Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP |
Matching Structure (courtesy of the PDB): |
|
