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Protein Overview: EG10285

General Information:
Name(s) found: fdhF / EG10285 [EcoGene]
Description(s) found:
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  • gi|3868721|gb|AAD13462.1| formate dehydrogenase-H, selenopolypeptide subunit [Escherichia coli str. K-12 substr. MG1655] [NCBI NR]
  • gi|182628291|sp|P07658.2|FDHF_ECOLI RecName: Full=Formate dehydrogenase H; AltName: Full=Formate-hydrogen-lyase-linked, selenocysteine-containing polypeptide; AltName: Full=Formate dehydrogenase-H subunit alpha; Short=FDH-H [NCBI NR]
  • gi|16131905|ref|NP_418503.1| formate dehydrogenase-H, selenopolypeptide subunit [Escherichia coli str. K-12 substr. MG1655] [NCBI NR]
  • formate dehydrogenase-H, selenopolypeptide subunit / Formate dehydrogenase H, selenopeptide; molybdate-dependent, sulfur-dependent; part of FHL-1 and FHL-2 (formate hydrogenlyase) complexes [EcoGene]
  • Formate dehydrogenase H OS=Escherichia coli (strain K12) GN=fdhF PE=1 SV=2 [Swiss-Prot]
  • formate dehydrogenase H, selenopolypeptide subunit; selenopolypeptide subunit of formate dehydrogenase H [Escherichia coli K12]gi|3868721|gb|AAD13462.1| selenopolypeptide subunit of formate dehydrogenase H; formate dehydrogenase H, selenopolypeptide subu [nrdb_11152004_Chlamydomonas]
  • selenopolypeptide subunit of formate dehydrogenase H [Escherichia coli K12] [wormpep130-phg-ecoli-orf-rand.fasta]
  • selenopolypeptide subunit of formate dehydrogenase H; formate dehydrogenase H, selenopolypeptide subunit [Escherichia coli K12] [WormBase_C-elegans_na_01-20-2005_combined_reversed.fasta]
  • Formate dehydrogenase H (Formate-hydrogen-lyase-linked, selenocysteine-containing polypeptide) (Formate dehydrogenase-H alpha subunit) (FDH-H) [NCBI-RefSeq_human_na_08-09-2006_reversed.fasta]
  • formate dehydrogenase-H, selenopolypeptide subunit [Escherichia coli str. K-12 substr. MG1655] [NCBI-RefSeq_human_na_08-09-2006_reversed.fasta]
  • formate dehydrogenase-H, selenopolypeptide subunit [Escherichia coli K12]| [wormORF-contam.fasta]
    • Organism: Escherichia coli K-12
    Length: 715 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKVVTVCPY CASGCKINLV VDNGKIVRAE AAQGKTNQGT LCLKGYYGWD FINDTQILTP  60
   61 RLKTPMIRRQ RGGKLEPVSW DEALNYVAER LSAIKEKYGP DAIQTTGSSR GTGNETNYVM 120
  121 QKFARAVIGT NNVDCCARVU HGPSVAGLHQ SVGNGAMSNA INEIDNTDLV FVFGYNPADS 180
  181 HPIVANHVIN AKRNGAKIIV CDPRKIETAR IADMHIALKN GSNIALLNAM GHVIIEENLY 240
  241 DKAFVASRTE GFEEYRKIVE GYTPESVEDI TGVSASEIRQ AARMYAQAKS AAILWGMGVT 300
  301 QFYQGVETVR SLTSLAMLTG NLGKPHAGVN PVRGQNNVQG ACDMGALPDT YPGYQYVKDP 360
  361 ANREKFAKAW GVESLPAHTG YRISELPHRA AHGEVRAAYI MGEDPLQTDA ELSAVRKAFE 420
  421 DLELVIVQDI FMTKTASAAD VILPSTSWGE HEGVFTAADR GFQRFFKAVE PKWDLKTDWQ 480
  481 IISEIATRMG YPMHYNNTQE IWDELRHLCP DFYGATYEKM GELGFIQWPC RDTSDADQGT 540
  541 SYLFKEKFDT PNGLAQFFTC DWVAPIDKLT DEYPMVLSTV REVGHYSCRS MTGNCAALAA 600
  601 LADEPGYAQI NTEDAKRLGI EDEALVWVHS RKGKIITRAQ VSDRPNKGAI YMTYQWWIGA 660
  661 CNELVTENLS PITKTPEYKY CAVRVEPIAD QRAAEQYVID EYNKLKTRLR EAALA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..715] PSI-BLAST 1000.0 REDUCED FORM OF FORMATE DEHYDROGENASE H FROM E. COLI

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nitrate reductase activity
    		•  13.0318477645691 bayes_pls_golite062009
  • oxidoreductase activity, acting on other nitrogenous compounds as donors
    		•  12.1969883329386 bayes_pls_golite062009
  • trimethylamine-N-oxide reductase activity
    		•  8.75612712598998 bayes_pls_golite062009
  • 4 iron, 4 sulfur cluster binding
    		•  6.81363258746891 bayes_pls_golite062009
  • formate dehydrogenase activity
    		•  6.68295624624715 bayes_pls_golite062009
  • molybdenum ion binding
    		•  6.01193841906432 bayes_pls_golite062009
  • iron-sulfur cluster binding
    		•  5.7442724322527 bayes_pls_golite062009
  • metal cluster binding
    		•  5.7442724322527 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH, nitrogenous group as acceptor
    		•  2.54554723799271 bayes_pls_golite062009
  • catalytic activity
    		•  1.93875927205186 bayes_pls_golite062009
  • oxidoreductase activity
    		•  1.8662488889516 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors
    		•  1.84836110501265 bayes_pls_golite062009
  • carbon-carbon lyase activity
    		•  1.29705810885029 bayes_pls_golite062009
  • carboxy-lyase activity
    		•  1.27093915206504 bayes_pls_golite062009
  • oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
    		•  0.968773059107375 bayes_pls_golite062009
  • lyase activity
    		•  0.603656450860878 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH
    		•  0.134493772161849 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle