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Protein Overview: gi|25501439

General Information:
Name(s) found: gi|25501439 [NCBI NR]
Description(s) found:
Found 2 descriptions.
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  • pir||H97078 araC-type DNA-binding domain-containing protein [imported] - Clostridium acetobutylicum [NCBI NR]
    • Organism: Clostridium acetobutylicum
    Length: 295 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDKSTYFDR KSKKEDCFVD IFFKDDILNG ENFKRHWHEH LQIYYFTAGT AYLECAQNKF  60
   61 DVTTGSIAII NSNELHYLES HSNNLKFYTI RIEPTFLFSN KEDLLQTKYL APLALNRITF 120
  121 KNLIENDLQI LECIKTILKE YSSKNIGYEL AVKANIYQLI VYLLRGYVDK ILNENEFEER 180
  181 KRILNKFQCV FRLIEEKYTE KLTLNELADC VNFSTHHFCR TFKQMTGKTT TDYINGIRLY 240
  241 KSTNYLKQTD LNITEIAIKC GFDNNNYFSR LFKKHYDMTP TKYRKLYAGH FSKII

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..181] PSI-BLAST 5.221849 Apo form of the Y31V mutant dimerization domain fragment of Escherichia coli regulatory protein AraC
    2 View Details [182..295] PSI-BLAST 20.69897 Rob transcription factor, N-terminal domain; Rob transcription factor, C-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • transcription regulator activity
    		•  3.57523737355937 bayes_pls_golite062009
  • DNA binding
    		•  3.00143272905695 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.89825020286436 bayes_pls_golite062009
  • transcription factor activity
    		•  2.53664874743748 bayes_pls_golite062009
  • binding
    		•  1.68817361068715 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.46503550280898 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.24108783215685 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.20862059645422 bayes_pls_golite062009
  • protein binding
    		•  0.111941607625758 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle