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Protein Overview: gi|113623405, gi...

General Information:
Name(s) found: gi|50943395 [NCBI NR]
gi|37805895 [NCBI NR]
gi|215704237 [NCBI NR]
gi|125602825 [NCBI NR]
gi|115475680 [NCBI NR]
gi|113623405 [NCBI NR]
Description(s) found:
Found 9 descriptions.
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  • gi|50943395|ref|XP_481225.1| putative syntaxin of plants 52 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|37805895|dbj|BAC99744.1| putative syntaxin of plants 52 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|215704237|dbj|BAG93077.1| unnamed protein product [Oryza sativa Japonica Group] [NCBI NR]
  • gi|125602825|gb|EAZ42150.1| hypothetical protein OsJ_025633 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|115475680|ref|NP_001061436.1| Os08g0277900 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113623405|dbj|BAF23350.1| Os08g0277900 [Oryza sativa Japonica Group] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 232 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSDPWMK EYNEASRLAD DINSMIADRG SLPQSGPEII RHTSAIRRKI TILCTRLDSL  60
   61 EALLSKIPPK SLSDKELHKR QDTLSNLKSK TKQMATSFNM SNFANREDLL GQNKKAADDM 120
  121 SRVAGLDNQG IVGLQRQIMK EQDEGLEKLE ETVLSTKHIA LAVNEELTLH TRLIDDLEDH 180
  181 VDVTNSRLQR VQKRLAILNK RTKGGCSCMC LLLSVVAIVI LAVIVWLLIK YM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..232] PSI-BLAST 25.69897 Syntaxin 1A N-terminal domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • SNAP receptor activity
    		•  1.98218731493745 bayes_pls_golite062009
  • transporter activity
    		•  1.74189664015129 bayes_pls_golite062009
  • binding
    		•  1.67115282869397 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.49085442233849 bayes_pls_golite062009
  • protein binding
    		•  1.29784552353214 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.13101548288086 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.643064875848901 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.370484918396857 bayes_pls_golite062009
  • protein transporter activity
    		•  0.14240382084743 bayes_pls_golite062009
  • channel activity
    		•  0.0647076360772156 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  0.0647076360772156 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  0.0435980899803177 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle