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Protein Overview: ROC1_ORYSJ

General Information:
Name(s) found: ROC1_ORYSJ [Swiss-Prot]
Description(s) found:
Found 10 descriptions.
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  • Homeobox-leucine zipper protein ROC1 OS=Oryza sativa subsp. japonica GN=ROC1 PE=2 SV=1 [Swiss-Prot]
    • Organism: Oryza sativa Japonica Group
    Length: 784 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPARRMPPV IGRNGVAYES PSAQLPLTQA DMLDSHHLQQ ALQQQYFDQI PVTTTAAADS  60
   61 GDNMLHGRAD AGGLVDEFES KSCSENVDGA GDGLSGDDQD PNQRPRKKRY HRHTQHQIQE 120
  121 MEAFFKECPH PDDKQRKELS RELGLEPLQV KFWFQNKRTQ MKNQHERHEN AQLRAENDKL 180
  181 RAENMRYKEA LSSASCPNCG GPAALGEMSF DEHHLRVENA RLRDEIDRIS GIAAKHVGKP 240
  241 PIVSFPVLSS PLAVAAARSP LDLAGAYGVV TPGLDMFGGA GDLLRGVHPL DADKPMIVEL 300
  301 AVAAMDELVQ MAQLDEPLWS SSSEPAAALL DEEEYARMFP RGLGPKQYGL KSEASRHGAV 360
  361 VIMTHSNLVE ILMDVNQFAT VFSSIVSRAS THEVLSTGVA GNYNGALQVM SMEFQVPSPL 420
  421 VPTRESYFVR YCKNNSDGTW AVVDVSLDSL RPSPVQKCRR RPSGCLIQEM PNGYSKVTWV 480
  481 EHVEVDDSSV HNIYKPLVNS GLAFGAKRWV GTLDRQCERL ASAMASNIPN GDLGVITSVE 540
  541 GRKSMLKLAE RMVASFCGGV TASVAHQWTT LSGSGAEDVR VMTRKSVDDP GRPPGIVLNA 600
  601 ATSFWLPVPP AAVFDFLRDE TSRSEWDILS NGGAVQEMAH IANGRDHGNS VSLLRVNSAN 660
  661 SNQSNMLILQ ESCTDASGSY VVYAPVDIVA MNVVLNGGDP DYVALLPSGF AILPDGPSGN 720
  721 AQAAVGENGS GSGGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIACTV ERIKAAVCRD 780
  781 SNPQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..88] deduced N/A No confident structure predictions are available.
    2 View Details [89..183] PSI-BLAST 17.221849 Paired protein
    3 View Details [184..265] deduced N/A No confident structure predictions are available.
    4 View Details [266..532] FFAS03 2.73 No description for 2r55A was found.
    5 View Details [533..659] deduced N/A No confident structure predictions are available.
    6 View Details [660..784] MSA 2.064973 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.334577365229545 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0696342306231097 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle