Protein Overview: gi|37654282

General Information:
Name(s) found:	gi\|37654282 [NCBI NR]
Description(s) found: SHOW ONLY BEST	gi\|37654282\|gb\|AAQ96246.1\| LRRGT00033 [Rattus norvegicus] [NCBI NR] LRRGT00033 [Rattus norvegicus] [nrdb_11152004_Chlamydomonas] Tax_Id=10116 LRRGT00033 [EBI-IPI_rat_3.17_05-10-2006_con_reversed.fasta] Tax_Id=10116 Gene_Symbol=LOC498544 LRRGT00033 [rat-ipi-250309-contam.fasta] LRRGT00033 OS=Rattus norvegicus GN=LOC498544 [011711_HMR.fasta]
Organism:	Rattus norvegicus
Length:	2042 amino acids
Gene Ontology:
Cellular Component:	viral capsid [IEA]
Biological Process:	proteolysis [IEA] DNA integration [IEA] virion assembly [IEA]
Molecular Function:	DNA binding [IEA] ribonuclease H activity [IEA] zinc ion binding [IEA] aspartic-type endopeptidase activity [IEA] metal ion binding [IEA] structural molecule activity [IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDSTSQAFP LRQGTGGQTQ YWPFSAADIY NWKQNNPSFS KDPVALTDLI ESVLLTHQPT  60
   61 WDDCQQLLQD LLTSEKKQRV FLEARKHVLG DDGRPTQLPE DQTGILIQLK LLLAGLRGAI 120
  121 RRPTNLAQVK QVLQEAGETP STFLERLKEA YRMYTPYDPD DPGQMTSVSM SFIWQAAPDI 180
  181 RTKLQRLENL QGYTLQDLLK EAEKIFNKRE IKKKQKIESN VGRHSSGPRK EGRWGGGARK 240
  241 GLKLDKDQCA YYKEKGHWAR ECPKKPDTGA QHSVLTQASG QLSDWTAWVQ RATGEKQYRW 300
  301 TMDRRVQLAT GKVTHSFLHV PDCPYPLLGR DLLTKLKAQI HFEEGGARIT GPHGTLLQVL 360
  361 TLQLEDEYRL YEPGQDKPQS LEIDTWVTNF PLAWAETGGM GLALQQPPLI IQLKATTTPV 420
  421 SIKQYPLSHK AYQGIRPHIT RLLDQGILIP CRSPWNTPLL PVKKPGTGDY RPVQDLRKGY 480
  481 AKGVLTQRLG PWKRPVAYLS KKLDPVASGW PPCLRMVAAI AVLIKDTGKL TLGQPLTILT 540
  541 PHAVEALVKQ PPDRWLSNSH MTHYQALLLD AERVQFGPVV ALNPATLLPL PEEAEQHDCL 600
  601 QILTEVHRTR PDLSDQPLQN ADHTWYTDDN SFLAEGERKA GAAVTMEDKV IWAKALPAGT 660
  661 STQRAELIAL TQALKMAKGK RLNVYTDSHY AFATAHIHGE IYRRQGLLTS KDKDIKNKAK 720
  721 ILALLEALFL PKRLSIIHCP GHQKGHNPKA RRNRLADATA REAAMSKQIL PLNSPDQPTP 780
  781 PPKMKTLLDR EEINLWFFLN RDKAIQKVTE SYKACAQVNP GKTMIGQRVR PRGHRPDIHW 840
  841 EIDFTEIKPG IYGYKYLLVF VDTFSGWVKA FPTKHETTKM VTKKLLEEIF PRYDMPQALG 900
  901 SDNGPAFVSQ DWVALLPLVL YRARNTPGPH GLTPFEIMYG APPPFVHFFD SNIADFADSP 960
  961 SLRAHLQALQ IVQRDVWRPL AAAYQDKLEH PVVPHPFQIG DTVWVRRHQT KNLMPQWKAP1020
 1021 YTVLLTTPTA LKYLLVFVDT FSGWVKAFPT KHETTKMVTK KLLEKIFPRY DMPQALGSDN1080
 1081 GPAFVSQDWV ALLPLVLYRA RNTPGPHGLT PFEIMYGTPP PFVHFFDSNI ADSADSPSLR1140
 1141 AHLQALQIVQ RDVWRPLAAA YQDKLEHPVV PHPFQIGDTV WVRRHQTKNL MPQWKAPYTV1200
 1201 LLTTPTALKV PVPVYPDNKP NPLADCILWC LGLVFGVRGS PSRGKVLPES FSFGALAGKG1260
 1261 DPPPRDHRPP TGRTNVGQSL TTPLSLTLDH WKDVHDRAHN QSVEVKKKGK WQTLYTSEWP1320
 1321 TFGAGWPVNG TFNKIIILQV KDRVVHGHPD QLLLAGLRGA IRRPTNLAQV KQVLQEAGET1380
 1381 PSTFLERLKE AYRMYTPYDP DDPGQMTSVS MSFIWQAAPD IRTKLQRVTL KVGGQPVTFL1440
 1441 VDTGAQHSVL TQASGQLSDW TAWVQRATGE KQYRWTTDRR VQLATALLLD AERVQFGPIV1500
 1501 ALNPATLLPL PEETEQHDCL QILAEVHGTR PDLSDQPLQN ADHTWYTDDN SFLAEGERKA1560
 1561 RAAVTTEDKV IWAKALPVST SAQRAELIAL TQALKMTKGK RLNIYTDSRY AFATAHIHGE1620
 1621 IYRRRGLLTS EGKDMAKILA LLEALFLPKR LSIIHCPGHQ KGQNPEARRN RLADATAREA1680
 1681 AMSKQILPLN SPDQPTPPPV GQTSWVYAHE DIELLKKMGA IYHPQLKQTF ELISFLHKKI1740
 1741 KTLLDREEIN LWFFLNWDKA IQKVTESYKA CAQVNLGRTM IGQGVRPRGQ RPDIHWEIDF1800
 1801 TKIKPGIYGY KYLLVFVDTF SGWVKAFPTK HETTKMVTKK LLEKIFPRYG MPQALGSDNG1860
 1861 PAFVSQVSQL VAKLLGIDWK LHCAYRPQSS GQVERMNRTI KETLSKLTLA TGSKDWVALL1920
 1921 PLVLYRARNT PGPHGLTPFE IMYGAPPPFV HFFDSNIADF ADSPSLRAHL QALQIVQRDV1980
 1981 WRPLAAAYQD KLEHPVVPHP FQIGDTVWVR RHQTKNLEPR WKGPYTVLLT TPTALKVDGV2040
 2041 AA

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Protein Overview: gi|37654282

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: