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Protein Overview: RNPH_CHRVO

General Information:
Name(s) found: RNPH_CHRVO [Swiss-Prot]
Description(s) found:
Found 5 descriptions.
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  • Ribonuclease PH OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=rph PE=3 SV=1 [Swiss-Prot]
    • Organism: Chromobacterium violaceum ATCC 12472
    Length: 238 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPSQRSADA MRVVRLTRSY TKHAEGSVLV EFGDTKVICT ASVEETVPSF LKGKGQGWVT  60
   61 AEYGMLPRST GSRMRRESAA GKQSGRTQEI QRLIGRSLRA VTDLAKLGER QIVIDCDVIQ 120
  121 ADGGTRTASI TGAYVALADA IRGLIDAGKL SATPLRDQVA AVSVGVYKGQ PVLDLDYLED 180
  181 SDCETDMNVV MTGSGRFVEV QGTAEGEPFS EEEMAAMLGL ARKGIAELLA HQRQALNV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..238] PSI-BLAST 72.30103 Crystal Structure Of The tRNA Processing Enzyme Rnase pH From Pseudomonas Aeruginosa

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ribonuclease activity
    		•  2.56399046328775 bayes_pls_golite062009
  • polyribonucleotide nucleotidyltransferase activity
    		•  1.91194827528589 bayes_pls_golite062009
  • catalytic activity
    		•  1.24889475603062 bayes_pls_golite062009
  • hydrolase activity
    		•  1.07767181032042 bayes_pls_golite062009
  • exoribonuclease activity
    		•  0.98086935928487 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  0.92844426728299 bayes_pls_golite062009
  • peptidase activity
    		•  0.251251352515662 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle