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Protein Overview: gi|11263275

General Information:
Name(s) found: gi|11263275 [NCBI NR]
Description(s) found:
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  • pir||G82148 exodeoxyribonuclease III VC1860 [imported] - Vibrio cholerae (strain N16961 serogroup O1) [NCBI NR]
  • exodeoxyribonuclease III [Vibrio cholerae O1 biovar eltor str. N16961]gi|15641862|ref|NP_231494.1| exodeoxyribonuclease III [Vibrio cholerae O1 biovar eltor str. N16961]gi|11263275|pir||G82148 exodeoxyribonuclease III VC1860 [imported] - Vibrio cholerae [nrdb_11152004_Chlamydomonas]
  • Exonuclease III OS=Vibrio cholerae MO10 GN=VchoM_01092 PE=4 SV=1 [vibrio_cholerae.fasta]
  • Exodeoxyribonuclease III OS=Vibrio cholerae GN=xth PE=4 SV=1 [vibrio_cholerae.fasta]
  • Exodeoxyribonuclease III OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=VC_1860 PE=4 SV=1 [vibrio_cholerae.fasta]
    • Organism: Vibrio cholerae
    Length: 268 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVISFNING LRARLHQLQA LIDKHQPDVI GLQEIKVHDE AFPRQEVEAM GYQVYFHGQK  60
   61 AHYGVAILCK QTPVEVIKGF PTDNEEHQKR MIMATFADQN GQKTTILNGY FPQGDNVEHE 120
  121 TKFPYKRQFY RDLMTYLREH RSNSERLVVM GDINISPLDL DIGIGEANRK RWLQTGKCSF 180
  181 QPEEREWLQT LLDWGLVDTF RQLHPDVSDQ FSWFDYRSRG FEDNRGLRID VILATPTLAE 240
  241 TCQEAGIDYE LRAIDKPSDH APIWTTFK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..268] PSI-BLAST 66.39794 EXONUCLEASE III FROM ESCHERICHIA COLI

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • exonuclease activity
    		•  2.70644978530491 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  2.57658637220545 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  2.54419310609558 bayes_pls_golite062009
  • hydrolase activity
    		•  2.50832753420463 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  2.36841783202726 bayes_pls_golite062009
  • exodeoxyribonuclease activity
    		•  1.8139951607534 bayes_pls_golite062009
  • exodeoxyribonuclease activity, producing 5'-phosphomonoesters
    		•  1.7967853371745 bayes_pls_golite062009
  • nuclease activity
    		•  1.78432551160775 bayes_pls_golite062009
  • catalytic activity
    		•  1.76511376991978 bayes_pls_golite062009
  • binding
    		•  1.74593496417303 bayes_pls_golite062009
  • DNA binding
    		•  0.961734136090079 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.947430734766989 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.597390739522692 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.58571720340663 bayes_pls_golite062009
  • transcription factor binding
    		•  0.55477888309075 bayes_pls_golite062009
  • protein binding
    		•  0.476649214025345 bayes_pls_golite062009
  • inositol or phosphatidylinositol phosphatase activity
    		•  0.228910502815798 bayes_pls_golite062009
  • phosphoric ester hydrolase activity
    		•  0.100365481550461 bayes_pls_golite062009
  • phosphatase activity
    		•  0.00559251346312178 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle