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Protein Overview: gi|9654617, gi|1...

General Information:
Name(s) found: gi|9654617 [NCBI NR]
gi|15640240 [NCBI NR]
Description(s) found:
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  • gi|9654617|gb|AAF93386.1| ribonuclease PH [Vibrio cholerae O1 biovar El Tor str. N16961] [NCBI NR]
  • gi|15640240|ref|NP_229867.1| ribonuclease PH [Vibrio cholerae O1 biovar eltor str. N16961] [NCBI NR]
  • ribonuclease PH [Vibrio cholerae O1 biovar eltor str. N16961]gi|15640240|ref|NP_229867.1| ribonuclease PH [Vibrio cholerae O1 biovar eltor str. N16961]gi|11263570|pir||D82350 ribonuclease PH VC0210 [imported] - Vibrio cholerae (strain N16961 serogroup O [nrdb_11152004_Chlamydomonas]
  • ribonuclease PH [Vibrio cholerae O1 biovar eltor str. N16961] [nr-271106-contam.fasta]
    • Organism: Vibrio cholerae O1 biovar El Tor str. N16961
    Length: 257 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYNPAPTEL IQPQEGRDPM RPDNRAADQV RPIKITRHYT AYAEGSVLVE FGNTKVLCNA  60
   61 SIEEGVPRWL KGQGKGWVTA EYGMLPRATH SRTRREATNG KQGGRTMEIQ RLIARSLRAV 120
  121 VDLEAMGEIM ITVDCDVIQA DGGTRTASIT GASVALADAF AHLIAKGQLK KNPMKGHVAA 180
  181 VSVGILGEDV LCDLEYVEDS AADTDMNVVM TEEGKMIEIQ GTAEGEPFSH EQLLELLAVA 240
  241 KKGIADIVAV QKASLLD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..257] PSI-BLAST 75.522879 Crystal Structure Of The tRNA Processing Enzyme Rnase pH From Pseudomonas Aeruginosa

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ribonuclease activity
    		•  3.95473097235349 bayes_pls_golite062009
  • exoribonuclease activity
    		•  3.2089851107515 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  3.18053249872858 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  2.16830676862423 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.90115575554186 bayes_pls_golite062009
  • structural molecule activity
    		•  1.69321127364043 bayes_pls_golite062009
  • RNA binding
    		•  1.36549953164096 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.20748032530392 bayes_pls_golite062009
  • hydrolase activity
    		•  1.18773479836745 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.05662964529454 bayes_pls_golite062009
  • binding
    		•  0.907487229190259 bayes_pls_golite062009
  • catalytic activity
    		•  0.878454819018611 bayes_pls_golite062009
  • DNA binding
    		•  0.828609700556836 bayes_pls_golite062009
  • nuclease activity
    		•  0.69721312877891 bayes_pls_golite062009
  • 3'-5' exonuclease activity
    		•  0.477960254167 bayes_pls_golite062009
  • tRNA-specific ribonuclease activity
    		•  0.383567539949931 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.215640934684415 bayes_pls_golite062009
  • mRNA binding
    		•  0.17546516359584 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle