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Protein Overview: gi|34907808, gi|...

General Information:
Name(s) found: gi|34907808 [NCBI NR]
gi|215767331 [NCBI NR]
gi|215737004 [NCBI NR]
gi|19571060 [NCBI NR]
gi|18844835 [NCBI NR]
gi|125572458 [NCBI NR]
gi|115440741 [NCBI NR]
gi|113534181 [NCBI NR]
Description(s) found:
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  • gi|34907808|ref|NP_915251.1| similar to methionyl-tRNA synthetase [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|215767331|dbj|BAG99559.1| unnamed protein product [Oryza sativa Japonica Group] [NCBI NR]
  • gi|215737004|dbj|BAG95933.1| unnamed protein product [Oryza sativa Japonica Group] [NCBI NR]
  • gi|19571060|dbj|BAB86486.1| methionyl-tRNA synthetase-like protein [Oryza sativa Japonica Group] [NCBI NR]
  • gi|18844835|dbj|BAB85305.1| methionyl-tRNA synthetase-like protein [Oryza sativa Japonica Group] [NCBI NR]
  • gi|125572458|gb|EAZ13973.1| hypothetical protein OsJ_03899 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|115440741|ref|NP_001044650.1| Os01g0821800 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113534181|dbj|BAF06564.1| Os01g0821800 [Oryza sativa Japonica Group] [NCBI NR]
  • similar to methionyl-tRNA synthetase [Oryza sativa (japonica cultivar-group)]gi|19571060|dbj|BAB86486.1| P0485B12.17 [Oryza sativa (japonica cultivar-group)]gi|18844835|dbj|BAB85305.1| similar to methionyl-tRNA synthetase [Oryza sativa (japonica cultiva [nrdb_11152004_Chlamydomonas]
  • methionyl-tRNA synthetase-like protein [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
  • Os01g0821800 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 409 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAAADFAA SKRAMAYALC KHLSLDPNTI SSTSIEESDI ATLFSHIVKS SEDEVLKWVE  60
   61 FSSNFVGKCG EQHALLGNLN QDLSQKSVLL GNGFKPSVAD IVVFATIQVF VSHLGENELQ 120
  121 KYPHVLRWMD YIQNIVDFGT TVQKVNLTKS VFDPPSHPKK ADKGDTDPSS KKVVSGQKNV 180
  181 GKSDANVDSK KAAPENKAPE NKANPTPAKN NKPSGDKKKA QEKSAGKPNE GVADKAPQKT 240
  241 AEKDSECNVS ILNIQVGLIR KAWKHPSADS LLVEEIDLGD GNVHQVVSGL AKFFSPEELV 300
  301 NRHVVLITNV KPGKLRDVMS AGLVLCASNQ DHTVVEPLIP PEGAKPGERI SFAGFDGKPE 360
  361 DVLNPKKKQL DKITPDLHTD GNGIATYRGV PFTTSAGPCR SSVPNASIK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..352] PSI-BLAST 37.0 Methionyl-tRNA synthetase from Pyrococcus abyssi
    2 View Details [353..409] PSI-BLAST 45.69897 EMAP II

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity, forming carbon-oxygen bonds
    		•  7.22739538544605 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  7.22739538544605 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  7.21678612388154 bayes_pls_golite062009
  • ligase activity
    		•  5.98606099120849 bayes_pls_golite062009
  • isoleucine-tRNA ligase activity
    		•  3.76808520367507 bayes_pls_golite062009
  • catalytic activity
    		•  1.41356903593784 bayes_pls_golite062009
  • arginine-tRNA ligase activity
    		•  1.15514226827836 bayes_pls_golite062009
  • binding
    		•  1.12496911405027 bayes_pls_golite062009
  • protein binding
    		•  0.341429946042706 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.85

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle