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Protein Overview: gi|125601526, gi...

General Information:
Name(s) found: gi|50940027 [NCBI NR]
gi|50509525 [NCBI NR]
gi|33146655 [NCBI NR]
gi|215704250 [NCBI NR]
gi|125601526 [NCBI NR]
gi|115474089 [NCBI NR]
gi|113612179 [NCBI NR]
Description(s) found:
Found 10 descriptions.
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  • gi|50940027|ref|XP_479541.1| putative vacuolar targeting receptor [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|50509525|dbj|BAD31218.1| putative vacuolar targeting receptor [Oryza sativa Japonica Group] [NCBI NR]
  • gi|33146655|dbj|BAC80001.1| putative vacuolar targeting receptor [Oryza sativa Japonica Group] [NCBI NR]
  • gi|215704250|dbj|BAG93090.1| unnamed protein product [Oryza sativa Japonica Group] [NCBI NR]
  • gi|125601526|gb|EAZ41102.1| hypothetical protein OsJ_25594 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|115474089|ref|NP_001060643.1| Os07g0680000 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113612179|dbj|BAF22557.1| Os07g0680000 [Oryza sativa Japonica Group] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 626 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMMGCAVLL VVVASMAGEA AGRFVVEKNS LRVTSPAGLR GVYECAIGNF GMPQYGGTMH  60
   61 GVVVYPKANK KACRSFDDFD LSFKPKPGGL PIFLLVDRGD CYFTTKGWNA QTAGAAAVLV 120
  121 ADDRLEPLIT MDSPESSGTD YIEKITVPSA LVTKKFGDDL KKALENGDMV NVLLDWRESL 180
  181 PHPDERVEYE FWTNSNDECG AKCDMQMNFV RNFRGTAQVL EKRGYTQFTP HYITWYCPEA 240
  241 FVLSKQCRSQ CINHGRYCAP DPEQDFNIGY DGKDVVLQNL IQICLFKVGN ETHKPWVWWD 300
  301 YVHDFSIRCP MKEKKYTREC ANGVIKSLGL DLERINKCVG DPEADEENPV LKAEQDAQIG 360
  361 QGSRGDVTIL PTLVVNNKQY RGKLEKSAVL KAVCSGFEET TEPDVCLSQE IQTNECLESN 420
  421 GGCWQDKTNN FTACKDTFRG RVCECPIARG VKFVGDGYTH CEASGVGRCQ INNGGCWKET 480
  481 KNGKTVSACS NEESKGCKCP PGFKGDGIKS CEDIDECKDK LFCQCKDCSC ENTWGSYECS 540
  541 CGGSNMLYMR EHDTCISKVA SSSVGWGFLW VIFFGLALAG IGAYAVYKYR LRSYMDSEIR 600
  601 AIMAQYMPLE NQETPNQHRP VEHADI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..194] PSI-BLAST 13.69897 Structure of C5a peptidase- a key virulence factor from Streptococcus
    2 View Details [195..626] PSI-BLAST 25.69897 Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.286076792172079 bayes_pls_golite062009
  • protein binding
    		•  0.14494900666454 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle