| Protein: | gi|125601526, gi... |
| Organism: | Oryza sativa Japonica Group |
| Length: | 626 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125601526, gi....
| Description | E-value | Query Range |
Subject Range |
|
|
423.0 | [0..3] | [624..1] |
|
Region A: Residues: [1-194] |
1 11 21 31 41 51
| | | | | |
1 MTMMGCAVLL VVVASMAGEA AGRFVVEKNS LRVTSPAGLR GVYECAIGNF GMPQYGGTMH 60
61 GVVVYPKANK KACRSFDDFD LSFKPKPGGL PIFLLVDRGD CYFTTKGWNA QTAGAAAVLV 120
121 ADDRLEPLIT MDSPESSGTD YIEKITVPSA LVTKKFGDDL KKALENGDMV NVLLDWRESL 180
181 PHPDERVEYE FWTN
|
| Detection Method: |  |
| Confidence: | 13.69897 |
| Match: | 1xf1A |
| Description: | Structure of C5a peptidase- a key virulence factor from Streptococcus |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [195-626] |
1 11 21 31 41 51
| | | | | |
1 SNDECGAKCD MQMNFVRNFR GTAQVLEKRG YTQFTPHYIT WYCPEAFVLS KQCRSQCINH 60
61 GRYCAPDPEQ DFNIGYDGKD VVLQNLIQIC LFKVGNETHK PWVWWDYVHD FSIRCPMKEK 120
121 KYTRECANGV IKSLGLDLER INKCVGDPEA DEENPVLKAE QDAQIGQGSR GDVTILPTLV 180
181 VNNKQYRGKL EKSAVLKAVC SGFEETTEPD VCLSQEIQTN ECLESNGGCW QDKTNNFTAC 240
241 KDTFRGRVCE CPIARGVKFV GDGYTHCEAS GVGRCQINNG GCWKETKNGK TVSACSNEES 300
301 KGCKCPPGFK GDGIKSCEDI DECKDKLFCQ CKDCSCENTW GSYECSCGGS NMLYMREHDT 360
361 CISKVASSSV GWGFLWVIFF GLALAGIGAY AVYKYRLRSY MDSEIRAIMA QYMPLENQET 420
421 PNQHRPVEHA DI
|
| Detection Method: | |
| Confidence: | 25.69897 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.286076792172079 | bayes_pls_golite062009 |
| protein binding | 0.14494900666454 | bayes_pls_golite062009 |
