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Protein Overview: CD27B_ARATH

General Information:
Name(s) found: CD27B_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|30680846|ref|NP_849994.1| HBT (HOBBIT); binding [Arabidopsis thaliana] [NCBI NR]
  • gi|21304447|emb|CAD31951.1| HOBBIT protein [Arabidopsis thaliana] [NCBI NR]
  • Cell division cycle protein 27 homolog B OS=Arabidopsis thaliana GN=CDC27B PE=1 SV=1 [Swiss-Prot]
  • HOBBIT protein [Arabidopsis thaliana]gi|30680846|ref|NP_849994.1| cell division cycle family protein / CDC family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Cell division cycle family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: HBT | HBT (HOBBIT); binding | chr2:8639405-8643981 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • HBT (HOBBIT) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • HOBBIT protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: HBT, CDC27b | CDC27 family protein | chr2:8632324-8636900 REVERSE LENGTH=744 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 744 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    anaphase-promoting complex [IPI][ISS][TAS]
    spindle [IDA]
    cell plate [IDA]
    Biological Process: regulation of unidimensional cell growth [IGI]
    root development [IMP]
    regulation of cell division [IGI]
    root cap development [IMP]
    root meristem specification [IMP]
    cell differentiation [IMP]
    gamete generation [IGI]
    regulation of mitotic cell cycle [IMP][TAS]
    response to auxin stimulus [IMP]
    Molecular Function: binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAMLVDCVN NSLRHFVYKN AIFMCERLCA EFPSEVNLQL LATSYLQNNQ AYSAYHLLKG  60
   61 TQMAQSRYLF ALSCFQMDLL NEAESALCPV NEPGAEIPNG AAGHYLLGLI YKYTDRRKNA 120
  121 AQQFKQSLTI DPLLWAAYEE LCILGAAEEA TAVFGETAAL SIQKQYMQQL STSLGLNTYN 180
  181 EERNSTSTKN TSSEDYSPRQ SKHTQSHGLK DISGNFHSHG VNGGVSNMSF YNTPSPVAAQ 240
  241 LSGIAPPPLF RNFQPAVANP NSLITDSSPK STVNSTLQAP RRKFVDEGKL RKISGRLFSD 300
  301 SGPRRSSRLS ADSGANINSS VATVSGNVNN ASKYLGGSKL SSLALRSVTL RKGHSWANEN 360
  361 MDEGVRGEPF DDSRPNTAST TGSMASNDQE DETMSIGGIA MSSQTITIGV SEILNLLRTL 420
  421 GEGCRLSYMY RCQEALDTYM KLPHKHYNTG WVLSQVGKAY FELIDYLEAE KAFRLARLAS 480
  481 PYCLEGMDIY STVLYHLKED MKLSYLAQEL ISTDRLAPQS WCAMGNCYSL QKDHETALKN 540
  541 FLRAVQLNPR FAYAHTLCGH EYTTLEDFEN GMKSYQNALR VDTRHYNAWY GLGMIYLRQE 600
  601 KLEFSEHHFR MAFLINPSSS VIMSYLGTSL HALKRSEEAL EIMEQAIVAD RKNPLPMYQK 660
  661 ANILVCLERL DEALEVLEEL KEYAPSESSV YALMGRIYKR RNMHDKAMLH FGLALDMKPP 720
  721 ATDVAAIKAA MEKLHVPDEI DESP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..88] PSI-BLAST 9.522879 Helicobacter cysteine rich protein C (HcpC)
    2 View Details [89..532] PSI-BLAST 6.30103 No description for 2ooeA was found.
    3 View Details [533..744] PSI-BLAST 60.522879 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.0016189620256075 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.83

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle