| Protein: | CD27B_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 744 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CD27B_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
421.0 | [0..4] | [739..79] |
|
Region A: Residues: [1-88] |
1 11 21 31 41 51
| | | | | |
1 MEAMLVDCVN NSLRHFVYKN AIFMCERLCA EFPSEVNLQL LATSYLQNNQ AYSAYHLLKG 60
61 TQMAQSRYLF ALSCFQMDLL NEAESALC
|
| Detection Method: |  |
| Confidence: | 9.522879 |
| Match: | 1ouvA |
| Description: | Helicobacter cysteine rich protein C (HcpC) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [89-532] |
1 11 21 31 41 51
| | | | | |
1 PVNEPGAEIP NGAAGHYLLG LIYKYTDRRK NAAQQFKQSL TIDPLLWAAY EELCILGAAE 60
61 EATAVFGETA ALSIQKQYMQ QLSTSLGLNT YNEERNSTST KNTSSEDYSP RQSKHTQSHG 120
121 LKDISGNFHS HGVNGGVSNM SFYNTPSPVA AQLSGIAPPP LFRNFQPAVA NPNSLITDSS 180
181 PKSTVNSTLQ APRRKFVDEG KLRKISGRLF SDSGPRRSSR LSADSGANIN SSVATVSGNV 240
241 NNASKYLGGS KLSSLALRSV TLRKGHSWAN ENMDEGVRGE PFDDSRPNTA STTGSMASND 300
301 QEDETMSIGG IAMSSQTITI GVSEILNLLR TLGEGCRLSY MYRCQEALDT YMKLPHKHYN 360
361 TGWVLSQVGK AYFELIDYLE AEKAFRLARL ASPYCLEGMD IYSTVLYHLK EDMKLSYLAQ 420
421 ELISTDRLAP QSWCAMGNCY SLQK
|
| Detection Method: | |
| Confidence: | 6.30103 |
| Match: | 2ooeA |
| Description: | No description for 2ooeA was found. |
| Term | Confidence | Notes |
| binding | 0.0016189620256075 | bayes_pls_golite062009 |
|
Region A: Residues: [533-744] |
1 11 21 31 41 51
| | | | | |
1 DHETALKNFL RAVQLNPRFA YAHTLCGHEY TTLEDFENGM KSYQNALRVD TRHYNAWYGL 60
61 GMIYLRQEKL EFSEHHFRMA FLINPSSSVI MSYLGTSLHA LKRSEEALEI MEQAIVADRK 120
121 NPLPMYQKAN ILVCLERLDE ALEVLEELKE YAPSESSVYA LMGRIYKRRN MHDKAMLHFG 180
181 LALDMKPPAT DVAAIKAAME KLHVPDEIDE SP
|
| Detection Method: | |
| Confidence: | 60.522879 |
| Match: | 1w3bA |
| Description: | The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha. |
Matching Structure (courtesy of the PDB): |
|
