YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|25290024, gi|...

General Information:
Name(s) found: gi|25290025 [NCBI NR]
gi|25290024 [NCBI NR]
Description(s) found:
SHOW ONLY BEST
  • pir||AI2703 prokaryotic type I signal peptidase [imported] - Agrobacterium tumefaciens (strain C58, Dupont) [NCBI NR]
  • pir||A97486 prokaryotic type I signal peptidase sipF (AF065159) [imported] - Agrobacterium tumefaciens (strain C58, Cereon) [NCBI NR]
  • AGR_C_1904p [Agrobacterium tumefaciens str. C58]gi|17934941|ref|NP_531731.1| prokaryotic type I signal peptidase [Agrobacterium tumefaciens str. C58]gi|17739424|gb|AAL42047.1| prokaryotic type I signal peptidase [Agrobacterium tumefaciens str. C58]gi|1 [nrdb_11152004_Chlamydomonas]
    • Organism: Agrobacterium tumefaciens
    Length: 248 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKAEKKQN ALWENVKVII QALLLAMVIR TVLFQPFTIP SGSMMPTLLV GDYLFVNKFS  60
   61 YGYSKYSLPF SPNLFSGRIL EFSKPKRGDV VVFRLPPNPE VDYIKRLVGL PGDRVQVTNG 120
  121 VLFINGQPVP KQPDGTFTSD YRADPGTNVP VFRETLDNGV TYDTLDQSPD SRGDNTREFV 180
  181 VPEGHYFMMG DNRDNSLDSR FDVGFVPEEN LIGRASVIFF SLGNDTPFSR IWEWPANMRW 240
  241 DRLFKVVG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..248] PSI-BLAST 50.0 Crystal structure of Escherichia coli type I signal peptidase in complex with a lipopeptide inhibitor

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • peptidase activity
    		•  0.485843348899278 bayes_pls_golite062009
  • catalytic activity
    		•  0.415601732277814 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  0.237734983138449 bayes_pls_golite062009
  • hydrolase activity
    		•  0.188292586303013 bayes_pls_golite062009
  • protein binding
    		•  0.0579980138351139 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle