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Protein Overview: gi|54307380, gi|...

General Information:
Name(s) found: gi|54307380 [NCBI NR]
gi|46911800 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|54307380|ref|YP_128400.1| putative glycerol-3-phosphate repressor protein [Photobacterium profundum SS9] [NCBI NR]
  • gi|46911800|emb|CAG18598.1| putative glycerol-3-phosphate repressor protein [Photobacterium profundum SS9] [NCBI NR]
    • Organism: Photobacterium profundum SS9
    Length: 259 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQSKRHQEI IDIVKTQGYV STDDLVERFN VSPQTIRRDL NELAAENKIR RHHGGATIPS  60
   61 SSVNTSYNTR KVMQLAEKDR IAEAMAEHIP DGATLFIDIG TTPEAVARAL LNHNDLRIVT 120
  121 NNLNVASVLT GKDDFRVILA GGEVRNRDGG IVGEATLDFI SQFRLDFGIM GISGIDLDGS 180
  181 LLDFDYHEVR VKQAIIENSR CVMLGADHTK FGRNAMVNLG DISQIDMLFT DEYPPEALAK 240
  241 LITEHEIHME VVGQSNVPD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..63] PSI-BLAST 6.0 No description for 2p5vA was found.
    2 View Details [64..259] PSI-BLAST 19.522879 D-ribose-5-phosphate isomerase (RpiA), catalytic domain; D-ribose-5-phosphate isomerase (RpiA), lid domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  1.68776709414398 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.965520574888216 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.769423781192988 bayes_pls_golite062009
  • DNA binding
    		•  0.223734115868557 bayes_pls_golite062009
  • binding
    		•  0.199466104892993 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle