YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|54307380, gi\|...
Organism:	Photobacterium profundum SS9
Length:	259 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|54307380, gi|....

Description	E-value	Query Range	Subject Range
gi\|218555249, gi... - gi\|218555249\|ref\|YP_002388162.1\| DNA-bindng transcriptional repressor SrlR [Escherichia coli IAI1], ... gi\|218353030, gi... - gi\|218696298\|ref\|YP_002403965.1\| DNA-bindng transcriptional repressor SrlR [Escherichia coli 55989],... gi\|187428171, gi... - gi\|75176435\|ref\|ZP_00696579.1\| COG1349: Transcriptional regulators of sugar metabolism [Shigella boy... gi\|74313271, gi\|... - gi\|74313271\|ref\|YP_311690.1\| DNA-bindng transcriptional repressor SrlR [Shigella sonnei Ss046], gi\|7... gi\|81246629, gi\|... - gi\|82545218\|ref\|YP_409165.1\| DNA-bindng transcriptional repressor SrlR [Shigella boydii Sb227], gi\|8... gi\|75187426, gi\|... - gi\|75187426\|ref\|ZP_00700693.1\| COG1349: Transcriptional regulators of sugar metabolism [Escherichia ... gi\|75235700, gi\|... - gi\|75235700\|ref\|ZP_00719874.1\| COG1349: Transcriptional regulators of sugar metabolism [Escherichia ...	232.0	[0..1]	[256..1]

Back

Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQSKRHQEI IDIVKTQGYV STDDLVERFN VSPQTIRRDL NELAAENKIR RHHGGATIPS  60
   61 SSV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.0
Match:	2p5vA
Description:	No description for 2p5vA was found.

Predicted Domain #2

Region A:
Residues: [64-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTSYNTRKVM QLAEKDRIAE AMAEHIPDGA TLFIDIGTTP EAVARALLNH NDLRIVTNNL  60
   61 NVASVLTGKD DFRVILAGGE VRNRDGGIVG EATLDFISQF RLDFGIMGIS GIDLDGSLLD 120
  121 FDYHEVRVKQ AIIENSRCVM LGADHTKFGR NAMVNLGDIS QIDMLFTDEY PPEALAKLIT 180
  181 EHEIHMEVVG QSNVPD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.522879
Match:	1lk5A
Description:	D-ribose-5-phosphate isomerase (RpiA), catalytic domain; D-ribose-5-phosphate isomerase (RpiA), lid domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.68776709414398	bayes_pls_golite062009
nucleic acid binding	0.965520574888216	bayes_pls_golite062009
transcription regulator activity	0.769423781192988	bayes_pls_golite062009
DNA binding	0.223734115868557	bayes_pls_golite062009
binding	0.199466104892993	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: