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Protein Overview: VAP11_ARATH

General Information:
Name(s) found: VAP11_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|34329673|gb|AAQ63968.1| VAP27-1 [Arabidopsis thaliana] [NCBI NR]
  • gi|30023744|gb|AAP13405.1| At3g60600 [Arabidopsis thaliana] [NCBI NR]
  • gi|18411661|ref|NP_567101.1| VAP (VESICLE ASSOCIATED PROTEIN); protein binding [Arabidopsis thaliana] [NCBI NR]
  • gi|17473763|gb|AAL38320.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1 [Swiss-Prot]
  • VAP27-1 [Arabidopsis thaliana]gi|30023744|gb|AAP13405.1| At3g60600 [Arabidopsis thaliana]gi|17473763|gb|AAL38320.1| putative protein [Arabidopsis thaliana]gi|18411661|ref|NP_567101.1| vesicle-associated membrane protein, putative / VAMP, putative [Arab [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Vesicle-associated membrane protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: VAP, (AT)VAP, VAP27, VAP27-1 | VAP27-1 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1); protein binding | chr3:22411512-22413383 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At3g60600 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • VAP27-1 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1); structural molecule [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • VAP27-1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: VAP27-1, VAP, (AT)VAP, VAP27 | vesicle associated protein | chr3:22400537-22402408 FORWARD LENGTH=256 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 256 amino acids

    Gene Ontology:
    Cellular Component: endoplasmic reticulum membrane [IDA]
    nucleus [IDA]
    integral to membrane [IDA]
    cytosol [IDA]
    protein storage vacuole [IDA]
    endoplasmic reticulum [IDA]
    plasma membrane [IDA]
    Biological Process: intracellular transport [TAS]
    Molecular Function: protein binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNIDLIGMS NRDLIGMSNS ELLTVEPLDL QFPFELKKQI SCSLYLTNKT DNNVAFKVKT  60
   61 TNPKKYCVRP NTGVVLPRST CEVLVTMQAQ KEAPSDMQCK DKFLLQGVIA SPGVTAKEVT 120
  121 PEMFSKEAGH RVEETKLRVT YVAPPRPPSP VHEGSEEGSS PRASVSDNGH GSEFSFERFI 180
  181 VDNKAGHQEN TSEARALITK LTEEKQSAIQ LNNRLQRELD QLRRESKKSQ SGGIPFMYVL 240
  241 LVGLIGLILG YIMKRT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..183] PSI-BLAST 34.154902 Solution structure of the MSP domain of mouse VAMP-associated proteinA
    2 View Details [184..256] MSA 2.093994 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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