YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VAP11_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNIDLIGMS NRDLIGMSNS ELLTVEPLDL QFPFELKKQI SCSLYLTNKT DNNVAFKVKT  60
   61 TNPKKYCVRP NTGVVLPRST CEVLVTMQAQ KEAPSDMQCK DKFLLQGVIA SPGVTAKEVT 120
  121 PEMFSKEAGH RVEETKLRVT YVAPPRPPSP VHEGSEEGSS PRASVSDNGH GSEFSFERFI 180
  181 VDNKAGHQEN TSEARALITK LTEEKQSAIQ LNNRLQRELD QLRRESKKSQ SGGIPFMYVL 240
  241 LVGLIGLILG YIMKRT

Type	Start	End	Confidence
Non-Cytoplasmic	1	231	0.70
Transmembrane Helix	232	253	0.93
Cytoplasmic	254	256	0.66