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Protein Overview: RNR1_ARATH

General Information:
Name(s) found: RNR1_ARATH [Swiss-Prot]
Description(s) found:
Found 12 descriptions.
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  • Ribonuclease II, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=RNR1 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 803 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    mitochondrion [IDA]
    Biological Process: embryonic development ending in seed dormancy [NAS]
    rRNA processing [IMP]
    chloroplast organization [IMP]
    Molecular Function: 3'-5'-exoribonuclease activity [IDA]
    RNA binding [ISS]
    ribonuclease activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSVRAINGC SIIRTATSAG GPPVSLFRHR IQRLRASHLR EFSKLRLNFP LIRADRRFLG  60
   61 NSDAPSCSTC IHSLVESVSE ELESISRRKG SRMRVRASVK VKLTSYGEVL EDKLVNQELE 120
  121 AGLLLEFKKD ADRVLLAVLH RRDGKKNWMV FDQNGVSCSI KPQQITYIVP NVYNFDHTGL 180
  181 TDFLQRAQDN LDPQLLEFAW MELLEKNKPV TPEELAEMIY GRADPLESYC AHFLLSQDEI 240
  241 YFSILESKGS RSIYSPRPTE QVEELLRRQR VKEAEDKEFQ EFIQLLKSAK KAPSHAKPPK 300
  301 SSWLADDKVQ DRIGSLEAYA IDAWASTDQQ KLAGTILKSM GLQKTSVSAL NLLIDIGYFP 360
  361 VHVNLELLKL NLPTHHSEAI TEAAEALLSE SSDIDAVRRI DLTHLKVYAI DVDEADELDD 420
  421 ALSATRLQDG RIKIWIHVAD PARYVTPGSK VDREARRRGT SVFLPTATYP MFPEKLAMEG 480
  481 MSLRQGENCN AVSVSVVLRS DGCITEYSVD NSIIRPTYML TYESASELLH LNLEEEAELK 540
  541 LLSEAAFIRS QWRREQGAVD TTTLETRIKV VNPEDPEPLI NLYVENQADL AMRLVFEMMI 600
  601 LCGEVVATFG SQHNIPLPYR GQPQSNIDVS AFAHLPEGPV RSSSIVKVMR AAEMNFRCPV 660
  661 RHGVLGIPGY VQFTSPIRRY MDLTAHYQIK AFLRGGDNFP FSAGELEGIA ASVNMQSKVV 720
  721 RKLSNTGLRY WVIEFLRRQE KGKKYTALVL RFVKDRIASL LLVEVGFQAT AWVSEGKQVG 780
  781 DEIEVRVEEA HPRDDLILFK EVI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..162] deduced N/A No confident structure predictions are available.
    2 View Details [163..803] PSI-BLAST 105.0 No description for 2ix0A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.141433535514844 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.72

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle