YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: RNR1_ARATH
Organism: Arabidopsis thaliana
Length: 803 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNR1_ARATH.

Description E-value Query
Range
Subject
Range
gi|7406421, gi|1... - gi|7406421|emb|CAB85530.1| ribonuclease II-like protein [Arabidopsis thaliana], pir||T48246 ribonucl...
718.0 [0..1] [803..1]

Back

Predicted Domain #1
Region A:
Residues: [1-162]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSVRAINGC SIIRTATSAG GPPVSLFRHR IQRLRASHLR EFSKLRLNFP LIRADRRFLG  60
   61 NSDAPSCSTC IHSLVESVSE ELESISRRKG SRMRVRASVK VKLTSYGEVL EDKLVNQELE 120
  121 AGLLLEFKKD ADRVLLAVLH RRDGKKNWMV FDQNGVSCSI KP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [163-803]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQITYIVPNV YNFDHTGLTD FLQRAQDNLD PQLLEFAWME LLEKNKPVTP EELAEMIYGR  60
   61 ADPLESYCAH FLLSQDEIYF SILESKGSRS IYSPRPTEQV EELLRRQRVK EAEDKEFQEF 120
  121 IQLLKSAKKA PSHAKPPKSS WLADDKVQDR IGSLEAYAID AWASTDQQKL AGTILKSMGL 180
  181 QKTSVSALNL LIDIGYFPVH VNLELLKLNL PTHHSEAITE AAEALLSESS DIDAVRRIDL 240
  241 THLKVYAIDV DEADELDDAL SATRLQDGRI KIWIHVADPA RYVTPGSKVD REARRRGTSV 300
  301 FLPTATYPMF PEKLAMEGMS LRQGENCNAV SVSVVLRSDG CITEYSVDNS IIRPTYMLTY 360
  361 ESASELLHLN LEEEAELKLL SEAAFIRSQW RREQGAVDTT TLETRIKVVN PEDPEPLINL 420
  421 YVENQADLAM RLVFEMMILC GEVVATFGSQ HNIPLPYRGQ PQSNIDVSAF AHLPEGPVRS 480
  481 SSIVKVMRAA EMNFRCPVRH GVLGIPGYVQ FTSPIRRYMD LTAHYQIKAF LRGGDNFPFS 540
  541 AGELEGIAAS VNMQSKVVRK LSNTGLRYWV IEFLRRQEKG KKYTALVLRF VKDRIASLLL 600
  601 VEVGFQATAW VSEGKQVGDE IEVRVEEAHP RDDLILFKEV I

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 105.0
Match: 2ix0A
Description: No description for 2ix0A was found.

Predicted functions:

Term Confidence Notes
binding 0.141433535514844 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle